Hpro034939.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990155.1:716944-719165[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.78 3.1e+04 -3.7 0.1 35 45 100 110 94 110 0.76 2 4 3.3e-06 0.13 13.5 0.2 10 50 157 201 154 204 0.82 3 4 1.7e-05 0.67 11.2 0.1 22 45 285 308 280 313 0.90 4 4 4.9e-05 2 9.7 0.4 22 45 367 390 360 396 0.89
Sequence Information
- Coding Sequence
- ATGGATGACAATAATCCGAACTCAGACGAACACCATGACCAAAATCTACCTTCTAACAACCAAGATATTACCACGTCAATAGCTGAACAAGAATTTATAGAAattgaaatagataaagaaCCATTTCAAAATGAGCACAGCAATATAGCAATAAGTAAAGATGAACAGACAAAAAGCAATTTGAATCAAAATGAAGCAACATCTTTAGAAATTGATGTTGATCAAATCAAAACTGAAAATGATAGCACGGATAATGATATTGTTAGCAAAAGCAATACACTACAACCTCATGTAGAGAAGAAGAAGCGAGCACTGAAGCGAGAGTTAGAGCGACTCGGTGTTGATTtcaaagtagaaaatgatgatTTTGATGCTTTTGGTGATAATGacaatgtttttaagaaatataagtTTCGGGAAGGTCAAAGAAAGCCTAGTTATAGAATTCCAATGGACATCCCATTCCTTCCGGACACCAAGAAACCAAGAGCAGCGAAAGTCAATAAAGAAGATTCCGCAGAAGAAAACACTTGTTCTATATGCAACAAAACGTTTTGCAGCAGCTTTGAAATGCGTTGCCACTTCAAAGCACGGCACATAACGCACTACACCTGCTCACAATGCTCTTCGCAATTCGAGACCAACCAAGAATTAATATCTCACAAAGTCTTGCACAAAAATGAAAATCGTTCGTACCTCTGTCACGAATGCAAATTGGCGTTCACAGATCACTGCGACTACATCATCCACGAACTTACTCACTTTGGGCCTAATGTAGCTCACGTCTGTCCAGAATGTGGTATCGCATACAGAGGCAAATGGTCGTACCAAGCCCATATTATGACCCATTTTGACCGGCCACTGACTTGCCCAATATGCTCAATAAACGTCAACGGGGAGCATAATCTGCAACAgcatattaataaacataaagtaaatattgaaTGTGTTGAGTGCGGCAAGGTTTTTAATGAAAAAGGTAGCCATGATGATCACATGGCTATTCATACGGGGGTGAAAAAGTACCAATGTTTGTACTGCGGTAAGGGTTTCAGAACTCATTCAGCTAAAGCTGTCCATACGCGCATTCATACTAATGATCGACCATTTACATGCAATATATGTGAAAAATCCTTTTTTCAGTCTGTAGATTTGGCCCGTCACAGAGAAAGACATGAGACGATTAGGAAGTATGAATGTGATATTTGCCAGAAAAAGTTTGTACATAAGTATTTGATGTCTCAACATAAACGTATTCATACAAAGCAGAAAATATATGAGTGTCCTGAGTGTGATAAGAAGTTTCTTGCCTTAGGCGGGTTGAGGACTCATGTGCTGTTCAAACATACCACGGAACGGGTGGTGAAATGTGAGCTAtgcaataaaagctttattaacAAGAATCAGTATGATAAACATGCGAGGTCCAAGTATCATAAGAGAAACGAGTATAAAACGAAATTAAGTAAGAGAGagttaagtaatgtaatttaa
- Protein Sequence
- MDDNNPNSDEHHDQNLPSNNQDITTSIAEQEFIEIEIDKEPFQNEHSNIAISKDEQTKSNLNQNEATSLEIDVDQIKTENDSTDNDIVSKSNTLQPHVEKKKRALKRELERLGVDFKVENDDFDAFGDNDNVFKKYKFREGQRKPSYRIPMDIPFLPDTKKPRAAKVNKEDSAEENTCSICNKTFCSSFEMRCHFKARHITHYTCSQCSSQFETNQELISHKVLHKNENRSYLCHECKLAFTDHCDYIIHELTHFGPNVAHVCPECGIAYRGKWSYQAHIMTHFDRPLTCPICSINVNGEHNLQQHINKHKVNIECVECGKVFNEKGSHDDHMAIHTGVKKYQCLYCGKGFRTHSAKAVHTRIHTNDRPFTCNICEKSFFQSVDLARHRERHETIRKYECDICQKKFVHKYLMSQHKRIHTKQKIYECPECDKKFLALGGLRTHVLFKHTTERVVKCELCNKSFINKNQYDKHARSKYHKRNEYKTKLSKRELSNVI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822257;
- 90% Identity
- iTF_00822257;
- 80% Identity
- iTF_00822257;