Hpro035755.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990155.1:10372954-10375686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2e-06 0.00022 22.6 0.5 1 21 106 126 106 127 0.94 2 18 0.041 4.2 9.1 2.5 3 23 160 181 158 181 0.95 3 18 0.005 0.52 12.0 0.4 1 23 186 208 186 208 0.94 4 18 6.1 6.3e+02 2.3 6.1 1 21 211 231 211 232 0.94 5 18 0.00012 0.012 17.1 0.4 1 23 244 267 244 267 0.95 6 18 5.2e-05 0.0053 18.3 1.7 1 23 273 295 273 295 0.98 7 18 3 3e+02 3.3 0.3 5 23 305 323 303 323 0.95 8 18 4.3 4.4e+02 2.8 1.0 1 23 329 352 329 352 0.90 9 18 0.00062 0.063 14.9 0.4 2 21 478 497 477 498 0.93 10 18 0.02 2.1 10.1 0.1 3 23 505 526 504 526 0.96 11 18 0.00048 0.049 15.2 0.5 1 23 531 554 531 554 0.95 12 18 9.5e-05 0.0098 17.4 0.5 2 23 560 581 559 581 0.96 13 18 1 1.1e+02 4.7 1.2 2 20 585 603 585 605 0.91 14 18 1.4e-05 0.0014 20.1 1.7 1 23 631 654 631 654 0.95 15 18 0.00033 0.034 15.7 0.5 1 23 660 682 660 682 0.95 16 18 0.073 7.5 8.3 0.1 1 23 688 710 688 710 0.97 17 18 0.034 3.5 9.4 0.2 1 23 716 739 716 739 0.86 18 18 9.3e-06 0.00095 20.6 0.8 2 23 746 768 745 768 0.95
Sequence Information
- Coding Sequence
- ATGGACCCAGCTCTCCCGTCCGGAATATGCCGCCCCTGCTCAGAAGAAACCGTCGCAGCGATTAACTTCAGGAGCCTTTGTACCCAGTCGACGCAACACTGGACCGAGAGTACGTCCTTCCTTGCCCAGGTTCACGCACCGACTGACGAGGACAAAGCCTACTTTATCTTCTATAATGAAGAAAAGACCATCATCAAAGACCAAATTGACAGAGTTCCCACCAAAGCAGCCGCTTTAGACAGACTTAACCTAAGATATCAGCAGAAACCCGAGAAGATCCGAAAACCGAAACGACTCCACGATCAAAGCGTCGCATGCAAGTGTCCGGACTGCGGCAAAGTGTTCAGTATGCCTGAAAACCTAAACTATCATCTACGTAATACTCTTAAAAGAGCCTGCGAAATATGCATGGAGGTGATGCATAAGAAGAAGTTAGCAAAACACATGACCATAGAACACGGTGTAATAGTCACAGACTGCAATATCTGCTGTAAAGTTTTTGACAGCGAAATAgatttaaaacatcatttgaAACAAGCCCACAGCAATACCACCCATTCTTGTAATGTTTGCGGCAATGGTTTTAATAACGATAGAGCGTTAAGAGCTCACCTGTACGCCCATTCTCTATTTCATTGCAAATCTTGCAATTTGAGCTTTGAAAATATAAAGTGTTACAAATACCACCAAAAGCAGTGTAAAAAGGTGGATCAACCTTCTTTTAACACGTTTACTTGTGATACTTGTGGAGTCACATATAACCGGAAACCATCATTACGTATTCATATAATACAGAAGCATCTTAACGTACTCCCCTACGTTTGCCAAACTTGCGGAAAAAGGACATCTACCCTCGCTCACTTGAGATCGCACGAGAAAATTCACAAGACAGAGAGAGTCGTATTCCAGTGTTATTGTGGTGCTAAATTGCGCACGGAGTTGGGATACCAGCTTCATCAAAGAATCCATACTGGGGAGAGACCTTATGAGTGTGAATTTTGTGGCGATAGATTCCTTTCCTCCTCCCGAAGACTGGATCATATCAAAAGGCGTCATAGAGGGTCAAAAGAAATGCCTCACGCCTGTGAGCAGTGTTCAGCCCGGTTCATGAAAGAAGATTCCCTCACACCGGTCGGCGCGTGCGTAGCCTGCGCTAGCACAGCGCTCGCCGCTCAGGAATTCCGTATATTCGTCAGAAACTCCCAAAAAGCCTGGTGGAAAGCCATACAAAGTCTCGGTACCCTCCCCTTTGCTACTGGCCCACCCGTCAAATCCATGTGTGCCTTCATCAAACCTAGTGACTTTtcaatacaaacatacaaagactACTCTCAAGGAGACGCCAAAGCAATACTTAATAGACTTAAAAACAGAGTATCAAAGAAAACTATCGAAAGGAAACCCAGAGGAGCACGCACAGGACCCTCCTGCGTCTGCCCTGATTGTGGTAAATCCTTTTTAAGTCCTTTTTATTTAAACGTGCACTTAAAAAACAGTGGCCAAAAAGAAGCTTGTCAAATCTGCGGCTCCGTCTTTATTAGAGGGAAAGAGATGAAAAATCATTTGTCTTCTGTACACAATGAAAAAGCCTTCTTGTGTAAACAATGCCCTATTTTATTCACAAACGAAATACAACTGAAGAAACATATAAAGAAAGCTCACAAAGCTGGTGCATTGACCTGCTCAGATTGTGGACGAACCTTCCCGAGGCAAGCGTCTTTCGATACTCATTCACAAATGCACACGGTGAGGACTTGCAGAGCTTGTGGGGTACAGTTTACTAACAGAGGCTGCTATAGAGAACATAGATCCCAATGTGAACCTGACGCTAAACCAAACGCTCAAGCTTTCCCAAGAAGTAGACGATCTAATATCCGCGACCCAGCGCAATTCACCTGCGATCACtgtaataaaacttacaatTCTAGACCACAACTAAAAAATCACATATTATGGATTCACATGAATATACGACCTCATCAGTGCCAGTGGTGTGGAAAAAGGTTTTATACTCCCGCTCGACTGGCTGAACACACCGTTGTCCATACGCGCGTTCGAAATTTCGAATGTGATATTTGTGGCGCGAAACTTGTatccaaaatggcggcggtttACCATAGACGGAGGCATACGGGCGAACGGCCTTATGAATGTGGCGAATGTGGGGAAAGGTTTATTTCTGCATCAAGAAGGGGGGAACACGCTAAGCGGAGACATAATAAAGGCTATAGGATTCCTTGTTCAAAATGTCCGGCTAGTTTTGTTAGAAAGCATGAGCtaaaaaaacacatggaaaaggCGCATTCTCAGGATGTCATTCCGTGGTGA
- Protein Sequence
- MDPALPSGICRPCSEETVAAINFRSLCTQSTQHWTESTSFLAQVHAPTDEDKAYFIFYNEEKTIIKDQIDRVPTKAAALDRLNLRYQQKPEKIRKPKRLHDQSVACKCPDCGKVFSMPENLNYHLRNTLKRACEICMEVMHKKKLAKHMTIEHGVIVTDCNICCKVFDSEIDLKHHLKQAHSNTTHSCNVCGNGFNNDRALRAHLYAHSLFHCKSCNLSFENIKCYKYHQKQCKKVDQPSFNTFTCDTCGVTYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLRSHEKIHKTERVVFQCYCGAKLRTELGYQLHQRIHTGERPYECEFCGDRFLSSSRRLDHIKRRHRGSKEMPHACEQCSARFMKEDSLTPVGACVACASTALAAQEFRIFVRNSQKAWWKAIQSLGTLPFATGPPVKSMCAFIKPSDFSIQTYKDYSQGDAKAILNRLKNRVSKKTIERKPRGARTGPSCVCPDCGKSFLSPFYLNVHLKNSGQKEACQICGSVFIRGKEMKNHLSSVHNEKAFLCKQCPILFTNEIQLKKHIKKAHKAGALTCSDCGRTFPRQASFDTHSQMHTVRTCRACGVQFTNRGCYREHRSQCEPDAKPNAQAFPRSRRSNIRDPAQFTCDHCNKTYNSRPQLKNHILWIHMNIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECGECGERFISASRRGEHAKRRHNKGYRIPCSKCPASFVRKHELKKHMEKAHSQDVIPW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492234;
- 90% Identity
- -
- 80% Identity
- -