Hcor071742.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060896.1:173867397-173893861[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.041 8.4e+02 2.9 0.2 21 51 78 107 75 108 0.82 2 11 0.012 2.4e+02 4.6 0.0 22 47 106 131 101 137 0.80 3 11 0.086 1.8e+03 1.9 0.0 22 47 134 159 131 165 0.84 4 11 0.1 2.2e+03 1.6 0.0 23 43 163 183 160 188 0.89 5 11 0.0018 37 7.2 0.1 21 44 189 212 186 221 0.88 6 11 0.05 1e+03 2.6 0.0 23 46 219 242 212 248 0.85 7 11 0.13 2.7e+03 1.3 0.0 23 43 247 267 243 273 0.86 8 11 0.00035 7.2 9.5 0.1 21 46 273 298 265 306 0.87 9 11 0.089 1.8e+03 1.8 0.0 24 51 304 331 301 333 0.82 10 11 0.0035 73 6.3 0.0 23 52 331 360 326 362 0.92 11 11 0.015 3.1e+02 4.3 0.6 23 44 387 408 382 414 0.87
Sequence Information
- Coding Sequence
- ATGAACACGAGTGAGCCTGTTGACACATCAGATGAGTGCAAACGCACTGACAAGCTTGCAATGTCCATATTGGGTGATGTTGCTCATGGAAGTCAGTCTGTGCACATGTGCTGGGCTTGTGGGGCAGGGTTCCTGGATCTGAACCAACTCAAGGAGCACATCGTGACTCACACAGAGACTGCCAAGGAAACATCCCTGATACCTCAACAATACTTACAAGTGGACATCAACTCTGACAATCAACACACGTGTGACATTTGTGGTAAACAGTTCACAGAACAAGCGAGTTTACGTAAACACGAAATTTCACATCAAGTTAGACCTTATACATGTAACATCTGTGGCCGAGGATTCAACGCTGAAGGCAATCTGAAGAAACATGAGGTGTTGCATGCGGGGGAAAAGCCCTACAAGTGCAAGACATGTGATAAGCCATTCAGTCAACAAGGTAATCTTCACAAGCATGAACGTATACACACAGGTATTAAGCCATATTCTTGTAATGTGTGTGGCAAAGAGTTCTACCAACAGGGAAACCTAAAGAAACACGAAGTGATACATACAGGGGAGAAGCCCCATATTTGTCGAATATGTGGCAAATCATTCTCACAGCAAGGGAACATGAGGAAGCATGAACGTAGTCATACCGGCATCAAACCATACAGATGTGAAATCTGTGGAAAAGGCTTCACTCAGGCAGGAAATGTGAAGAAGCACCAAATTCTGCACACAGGACAGATGCCGTACTCTTGTAAAGTGTGTGGGAAGCCTTTCTATCAGGAGGGCAACTTGAAAAAGCACGAGGTGACTCACACTGGGGAGAAGCCTTATTCCTGCAGTATATGCTCCAAACAGTTCTCACAGCAAGGAAACATGCGTAAACATGAGAGACTTCACACGGGGCTAAGACCTTACGAGTGCAAGTTGTGTGGGAAACGTTTCACTCAGCAAGGCAATCTCAAGAAACATGAGATACTACACTCGGGTGTCAAGCCATTCTCTTGCAATATATGTGGCAAGCGATTTAGCCAGGATGTCAACTTGCAGAAACACAAAACTGTCCACACAGGGGCAAAGCCCTACCCGTGCAGAGTATGTGGACGTATGTTCTCCCAACTGGGCAACATGCTGAAACATGCTGTCATCCACACCGGTAGCAAACCCCATCAGTGTAGAATGTGTAACAAGAGATTCACACAGCAAGGAAACCTGCGCAAACATCAGCTGGCATGTCACGTTGGGATTTACCCAGCACAGCAACATGAAGAGACACCAGGAACATTGTgtacagatgctacaagtgataaCTTTACCATTAGCATAAGAGACACCAGCAACATTGTATACAGGTGCTACAAGTGA
- Protein Sequence
- MNTSEPVDTSDECKRTDKLAMSILGDVAHGSQSVHMCWACGAGFLDLNQLKEHIVTHTETAKETSLIPQQYLQVDINSDNQHTCDICGKQFTEQASLRKHEISHQVRPYTCNICGRGFNAEGNLKKHEVLHAGEKPYKCKTCDKPFSQQGNLHKHERIHTGIKPYSCNVCGKEFYQQGNLKKHEVIHTGEKPHICRICGKSFSQQGNMRKHERSHTGIKPYRCEICGKGFTQAGNVKKHQILHTGQMPYSCKVCGKPFYQEGNLKKHEVTHTGEKPYSCSICSKQFSQQGNMRKHERLHTGLRPYECKLCGKRFTQQGNLKKHEILHSGVKPFSCNICGKRFSQDVNLQKHKTVHTGAKPYPCRVCGRMFSQLGNMLKHAVIHTGSKPHQCRMCNKRFTQQGNLRKHQLACHVGIYPAQQHEETPGTLCTDATSDNFTISIRDTSNIVYRCYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821156;
- 90% Identity
- iTF_00821156;
- 80% Identity
- iTF_00821156;