Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.7e-10 1.1e-06 31.0 0.1 2 40 11 48 10 53 0.86

2 3 8.8 2e+04 -1.9 0.0 6 14 52 65 50 80 0.62

3 3 1.3e-06 0.003 19.9 0.0 2 40 100 138 99 142 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.7e-10	1.1e-06	31.0	0.1	2	40	11	48	10	53	0.86
2	3	8.8	2e+04	-1.9	0.0	6	14	52	65	50	80	0.62
3	3	1.3e-06	0.003	19.9	0.0	2	40	100	138	99	142	0.91

Coding Sequence: ATGGGCAGGCCACCACTTCATCCATGGACCGAGAAAACAATTCAGAGTGCAATAGAACAAGTTTTGGCTGGAGCTTCAATTCGCAAAGTGGCTTCCAGATTCAACTTGCCACGTTCTACCTTGCAGGGCTACGTGAAACGCAACCTGAATGCAGCTGAAGCATTGCAGAATGTGCTTTGTGTTTTATCACCAAGTGGCGGCGGCGGCAGCGGTGAAGGGGATACGACTATTACAAAGGCAATGACCATAACGGGAACTCATGTTACTACACCACCAGCAACAAGAATTCGGCGCTCAGAACAAGAATTGCAGAAGGCTGCAGAATGTGTACAAAAGGGCATGACTTTCCAGAATGTTTCAGACATCTTCAAAATACCTATATCGACAATCCGTTTCTACATGGCACGACGTGGCATTCTGCCCCAGCGCCGTAGAGGCCGTGCTGCACTGATTCAGAGTGCAGGTGTACCTTCGCCACACTACCTCACCATGCAGTTCAAGTTACCTGACATGGGTAATCCACCAAAACTTCCTTCTCCATGA
Protein Sequence: MGRPPLHPWTEKTIQSAIEQVLAGASIRKVASRFNLPRSTLQGYVKRNLNAAEALQNVLCVLSPSGGGGSGEGDTTITKAMTITGTHVTTPPATRIRRSEQELQKAAECVQKGMTFQNVSDIFKIPISTIRFYMARRGILPQRRRGRAALIQSAGVPSPHYLTMQFKLPDMGNPPKLPSP

Sequence clustering based on sequence similarity using MMseqs2