Hlin003031.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000003.1:6917734-6918483[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-07 7.3e-05 23.0 0.0 15 43 28 55 15 57 0.76
Sequence Information
- Coding Sequence
- atggtaaataaatataaaagaaaaactacAAATGCTTCCTGGGACGAAGATATTATGAAACGGGCAATGGAAGAAGCGAGCAAGACTTCAGTCAAAGGTGCAGCCACGAAATACGGCATCAACCTATCAACATTACAGCGGCATATCAAAAAAGGATGCCCGAAAAAAAAACTTGGTAGGTTCGTCACTGTTTTTAATGAAAGTCAGGAGAAAGAATTACTCGAATATGTCTTTCATATGGACTCACTCTTTTTTGGACTAACGAGAACTGATTTTTTGAAGCTTGTGTACCAATATGCTGAAATTAATAACATTCCTCACCCATTCAAAAACAATACCGCGGGTGAGGATTGGTTCGCCGGCTTTAAAATGCGACATCCTAATATGAGTCTTCGTCGCCCAGAACCGACATCAATAGCACGAGCCAGAGGTTTTAACAAACCACAAGTTCAAAGGTTTTTCGATATTCTGGAACAAGTGATTGAAAAGCACAATATTGACGCGACGCGCATATACAACGTCGATGAGACTGGGGTTCAAACTACCAGCAATAGGCCTCCCAGAATTCTTTGCAGATCGGGAAAAAAGCAAGTCGGTGTAATTTCAAGTGTCGAACGAGGTAAATTAACGACCATTGTATGCTGCTGCAATGCGGCAGGTTCGTTTGTACCACCTTTTCTAATTTTTGGCCGAAAGCGGATGGTGCCTCGACTTCTAGATGGGATCGGTAGCCAGTTGTACCGACAATAG
- Protein Sequence
- MVNKYKRKTTNASWDEDIMKRAMEEASKTSVKGAATKYGINLSTLQRHIKKGCPKKKLGRFVTVFNESQEKELLEYVFHMDSLFFGLTRTDFLKLVYQYAEINNIPHPFKNNTAGEDWFAGFKMRHPNMSLRRPEPTSIARARGFNKPQVQRFFDILEQVIEKHNIDATRIYNVDETGVQTTSNRPPRILCRSGKKQVGVISSVERGKLTTIVCCCNAAGSFVPPFLIFGRKRMVPRLLDGIGSQLYRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637583;
- 90% Identity
- -
- 80% Identity
- -