Hlin019504.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000025.1:666152-679167[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-05 0.0063 16.8 0.0 7 35 46 73 42 78 0.88 2 2 0.024 14 6.0 0.0 6 34 197 224 187 235 0.86
Sequence Information
- Coding Sequence
- ATGGACCACGGAATACCTTTAAACATTCACGCGAGACCCCGAGTAGTCGGCCGGAGACCCAACGCGATAGTCAACATCGAAACGGACGTGTTTCAAGAGAAATCTTACAAGCAGTACTCTTCGCAGCACCTCAGAGACGCCCTTATAGCAGTCAAGAAAGGTTATAGTGTATACGCCGCTTCGAATAAGTACGGAGTTCCTCGAAAAACCCTTAGGAATTGGatggaaaaatatgatattaaaagcCAGTTCTCTAAAGACTTCGCGATCGCCAACGTGCAGTGTCAGTACGACAGCCAGTCGGAGTCGGAGGGCGAAGCGCCGCGCCGCGTGAGCGTCACCGACGACCACACGTACGGCGCGCGAGACGAACCACCCGCCTTCATTATACAACACGTGTCCTCTACGGCGCGGACGCTGCCCAACCCTCCGTTCCCGGACATCCGGCCGAAGATAATGACGATAGGGCCGGGATACGCGCAGTCCGTCAACGTCATACACGTCGGCGACCGGCCACAGGTGTCGCAGTCGTCACAGCCGGCGGAACTAGGTCTGAACAAGCGTATCAGACGCAGCGAGCAGGTGCTGCGGCAAGCAGCCGACTGCGTGTCACGCGGACTCACCTTCCAAACAGTCTCCGAGCAGTTCAACATACCGATATCCACTATACGGTTCTTCATGGCGCGCAAGGGCATCTTGCCGCGACGACGGCGCGGCCGCACCACTCATGTGACACGGCCGTGCAGTAGCCCGGAGCCGCCATTCCATATGCAACACTTCAAACTGCCCGATATGGTAGCTCTTAAAACGGACGACGAAGAGCCCGCAACCTAA
- Protein Sequence
- MDHGIPLNIHARPRVVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFAIANVQCQYDSQSESEGEAPRRVSVTDDHTYGARDEPPAFIIQHVSSTARTLPNPPFPDIRPKIMTIGPGYAQSVNVIHVGDRPQVSQSSQPAELGLNKRIRRSEQVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRTTHVTRPCSSPEPPFHMQHFKLPDMVALKTDDEEPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084198;
- 90% Identity
- -
- 80% Identity
- -