Basic Information

Insect: Hylaea fasciaria
Gene Symbol: ush
Assembly: GCA_905147375.1
Location: LR990195.1:1454420-1457661[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0036 0.24 12.1 0.2 1 20 112 131 112 133 0.95

2 9 0.00054 0.036 14.7 0.4 1 23 170 192 170 192 0.98

3 9 0.065 4.4 8.1 0.6 3 20 222 239 221 241 0.92

4 9 0.0043 0.29 11.9 2.2 2 21 475 494 474 495 0.95

5 9 0.0046 0.31 11.7 0.2 3 20 523 540 521 542 0.90

6 9 3.8 2.5e+02 2.6 0.0 2 23 574 595 573 595 0.93

7 9 0.0076 0.51 11.1 1.3 1 23 601 623 601 623 0.99

8 9 0.05 3.4 8.5 1.1 1 23 661 684 661 684 0.96

9 9 0.13 8.5 7.2 0.9 2 20 727 745 727 747 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0036	0.24	12.1	0.2	1	20	112	131	112	133	0.95
2	9	0.00054	0.036	14.7	0.4	1	23	170	192	170	192	0.98
3	9	0.065	4.4	8.1	0.6	3	20	222	239	221	241	0.92
4	9	0.0043	0.29	11.9	2.2	2	21	475	494	474	495	0.95
5	9	0.0046	0.31	11.7	0.2	3	20	523	540	521	542	0.90
6	9	3.8	2.5e+02	2.6	0.0	2	23	574	595	573	595	0.93
7	9	0.0076	0.51	11.1	1.3	1	23	601	623	601	623	0.99
8	9	0.05	3.4	8.5	1.1	1	23	661	684	661	684	0.96
9	9	0.13	8.5	7.2	0.9	2	20	727	745	727	747	0.92

Sequence Information

Coding Sequence: ATGTCGGTCGGCGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAACTCGGGGGGCGAGCGGGCCGCGTCGAGCGGCGACGGGTCGCCGGCGTCGCGCGGCTCGCCCGTGCCGTCCCCGCCGCGCCTCCGCCTCAACCCCTCGCTGGCCACGGACCCCGCGCTGGCGCCGTCCGCCGTGCGGCTGAAGCGTGAGCCGGCGTCCCCGTCCCCGCCGCCCGCGCCCGCCGCCACCCCCCCGGCGGCGCGCGACTACCTCGCCGTGGCCGCGGCCGCCTTCCCCGGCCTGTTCCCCGCCGCCGCGCCCGGCTACGTGTGCAAGCCGTGCGGCATCCGCTACTCCTCGCTGAGCACGCTGCAGGCGCACCAGGAGCACTACTGCTCCAACCGCCCGCCCAAGCCGCCCTCCACGGACTCGCCCACCGACGCCAACGCGGACGAGTCCAGCGGCGACTCCAAGAGCGCGCGCCCGCCCAGCAAGCAGTACGCGTGCGCGCAGTGCTCCTACAGCGCCGACAAGAAAGTGAGCCTCAACCGACACATGCGCATGCACTCGTCGTCGCCCGTGAGCGCGGCGCCGGCGCCCGCGCCGCCCGCCAACGGCGACGCCGCCGAGGGCCCGCCCGCGCAGGACCGCTACTGCGCCGACTGCGACATCCGCTTCAGCTCCATCAAGACGTACCGCGCGCACAAGTCGCACTACTGCAGCACGCGGCAGGTGGTGAAGGGGGCGGGCGCGCGCAGCGGAGGCTCCGTCACGTCGGGCTCCGCCCCGCCGTCGCCGGGGCCCACGCCGCCCGCGCCGGCCCGCGCCGAGTACGCGCTGGCGCTGCCCACCAACCCGATCCTGATCCTGCCGGTGGGGTTGCTGCGCAACGCCAGCACGCTGCCGGGCGCCACGCTGCCGGACCCGGACGCCGCCTGCTTCCTGCTGCCCAACGGCACCTTCCAGCCGCTGAGCCAGGCGCTGTCGGGCGCGGACGGCGAGGCGCGCGGCGCCGTGCTGCGCTCCGTGAACCGCGCGCGCGAGGCGGCCCGGGACTGCGCCGCGCCGCTCGACCTCAGCCTGCGCCGCACGCCCGAGGCGGCGCCCGCCGACGACCCCGAGAAGGAGAACCGGCTGCGCTCGGCGACGCCGGAGCAGATCGTGTGCGCGCCGTCGCTGCCGCCGTCGCCGGGCACGCCGTCGCCGCGGCGCTCCAGCTCGCCGGGCGGCGAGAGCTCGCCCAAGCGGCGGCGGCGCTCGCGCGGGCCCACGCCCAAGCCGCCGTCGCCGCCCGAGGACAAGTACCGACCGGAGGAGCGGTTCCCCGCGGCGCCGCTGCCGCCGGCGCTGGCGCTGCGGCTGGCGGAGCTGCCGCCCCAGGCGCCCTCGGTGGTCGTCAAGCAGGGCGTGTCCAAATGCAAGGAGTGCAACATCGTGTTCTGCAAGTACGAGAACTACCGCGTCCACAAGCGGCTGTACTGCTCGGCGGGCGGCGGCGAGGAGCGCGCGAGCCCGGCGCCGGAGCCCGGGCCTCCGCCGCAGTACCGGCAGCTGATCTGCCTCGCGTGCGGGATCCACTTCAGCTCGCTGGACAACCTGCAGACGCACCAGTCGTACTACTGCACGAAGCGCGAGACGCGCTCGCCCCGCGGCGCGGAGGCGCGCGCGGCGGGCGGGGGCGGCGGCGGGGGCGGGGGCGAGGGCGGGTGGAAGTGCCCGTGCTGCGAGGTGGTGTCGCCGACGGCGGCGGCGGCGCAGCGGCACATGGAGGCGCACAAGGGCGTGAAGGCGTTCCGCTGCACCATCTGCCGGTACCGCGGGAACACGCTGCGCGGGATGCGCACGCACATACGCATGCACTTCAACAACAAGAAGCCCGCAGATCTGCAGGAGGAGAGCTACATCGCGTGCGTGCTGGAGGACGAGGGCCGCGAGGCCACGTCCCCGAGCCCGGCGGCGGGCGAGCGCACCCACCGCTGCAGCACCTGCGCCTACACCTCCACCTACCGCGGCAACGTCATCCGCCACGCGCGCCTGGTGCACGCCACCGACGAGCCAGAAGACGACACGCCCTCGCCCCCCGCCCTCCCCCTGTCCCTCCCCCTAGCGCCCGCACCCCCCCTAGACATCAAGAAGGAGCCGGACGCGGAGCCGGAAGAGACTCCTAACTACTGCAAGTCCTGCGACATCTCCTTCAAGTACGTGAACACCTTCAAGGCTCACAAGCAGTTCTACTGCACGGCTAATAACCAGGAGGCGGCTGCCAACAACAACGTGCCGGCGCACAGGGTCGGTGACACCCCGGTGCTGTAA
Protein Sequence: MSVGEDEEWGNESEAMPGEPRTPNSGGERAASSGDGSPASRGSPVPSPPRLRLNPSLATDPALAPSAVRLKREPASPSPPPAPAATPPAARDYLAVAAAAFPGLFPAAAPGYVCKPCGIRYSSLSTLQAHQEHYCSNRPPKPPSTDSPTDANADESSGDSKSARPPSKQYACAQCSYSADKKVSLNRHMRMHSSSPVSAAPAPAPPANGDAAEGPPAQDRYCADCDIRFSSIKTYRAHKSHYCSTRQVVKGAGARSGGSVTSGSAPPSPGPTPPAPARAEYALALPTNPILILPVGLLRNASTLPGATLPDPDAACFLLPNGTFQPLSQALSGADGEARGAVLRSVNRAREAARDCAAPLDLSLRRTPEAAPADDPEKENRLRSATPEQIVCAPSLPPSPGTPSPRRSSSPGGESSPKRRRRSRGPTPKPPSPPEDKYRPEERFPAAPLPPALALRLAELPPQAPSVVVKQGVSKCKECNIVFCKYENYRVHKRLYCSAGGGEERASPAPEPGPPPQYRQLICLACGIHFSSLDNLQTHQSYYCTKRETRSPRGAEARAAGGGGGGGGGEGGWKCPCCEVVSPTAAAAQRHMEAHKGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEDEGREATSPSPAAGERTHRCSTCAYTSTYRGNVIRHARLVHATDEPEDDTPSPPALPLSLPLAPAPPLDIKKEPDAEPEETPNYCKSCDISFKYVNTFKAHKQFYCTANNQEAAANNNVPAHRVGDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143470;
90% Identity: iTF_00056080;
80% Identity: -