Basic Information

Insect: Alsophila aescularia
Gene Symbol: ush
Assembly: GCA_946251895.1
Location: CAMIUG010000702.1:440368-446084[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0049 0.47 12.0 0.2 1 20 178 197 178 199 0.95

2 9 0.00073 0.071 14.5 0.4 1 23 236 258 236 258 0.98

3 9 0.035 3.4 9.3 0.8 3 20 288 305 287 307 0.93

4 9 0.0057 0.56 11.7 2.2 2 21 544 563 543 564 0.95

5 9 0.0063 0.61 11.6 0.2 3 20 592 609 590 611 0.90

6 9 5.1 4.9e+02 2.5 0.0 2 23 642 663 641 663 0.93

7 9 0.01 1 10.9 1.3 1 23 669 691 669 691 0.99

8 9 0.2 20 6.8 1.0 1 23 729 752 729 752 0.96

9 9 0.17 17 7.1 0.9 2 20 792 810 792 812 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0049	0.47	12.0	0.2	1	20	178	197	178	199	0.95
2	9	0.00073	0.071	14.5	0.4	1	23	236	258	236	258	0.98
3	9	0.035	3.4	9.3	0.8	3	20	288	305	287	307	0.93
4	9	0.0057	0.56	11.7	2.2	2	21	544	563	543	564	0.95
5	9	0.0063	0.61	11.6	0.2	3	20	592	609	590	611	0.90
6	9	5.1	4.9e+02	2.5	0.0	2	23	642	663	641	663	0.93
7	9	0.01	1	10.9	1.3	1	23	669	691	669	691	0.99
8	9	0.2	20	6.8	1.0	1	23	729	752	729	752	0.96
9	9	0.17	17	7.1	0.9	2	20	792	810	792	812	0.92

Sequence Information

Coding Sequence: ATGTGTGTGCGCATCCCGCGCAGCGTGTTGCCGCGGTACCGGCAGATCGTGCAGCGGAACGCCTTGACGCCCGCGTGCGCCTCCATGTGCCGCTGCGTCGCCGCCGCCGTTGGCGACACCACCTCGCAGCACGGGCACTTCCACCCACCCTCGCCGCCGCCCGCAGCGCCCGCGCCGCCCCCGCGCGCCTCTGGCCCTCGCGCGAGTGAGGACGAGGAATGGGGAAACGACAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCGGGAGGCGAGCGGGCCGCATCGAGCGGCGGCGGGTCGCCCGCATCGCGCGACTCGCCCGCCGCTTCGCCGCCGCCGCGGCTGCGCCTCAACACCGCGCTGGCGACGGACCCCGCGCTGGCGCCCTCCGCCGTGCGACTCAAGCGTGAACCGGCGACGCCGTCGCCGCCGCCCGCGCCCGTCGCCACCCCGCCGGCGCCGCGTGACTACCTCGCCGCGGCTGCGGCCGCCTTCCCCGGGCTGTTCCCCACCGCCGCGCCCGGCTACGTGTGCAAGCCGTGCGGCATCCGCTACTCCTCGCTGAGCACGCTGCAGGCGCACCAGGAGCACTATTGCTCCAACCGCCCACCGAAGCCGCCCTCCACGGACTCGCCCAACGACGCCAACGCGGACGAGTCGAGTGGCGACTCCAAGACACCGCGCCCGCCGAGCAAGCAGTATGCGTGCGCGCAGTGCTCCTACAGCGCCGACAAGAAAGTGAGCCTCAACCGGCACATGCGCATGCACTCGTCGTCACCCGTGGCCGCCGCGCCGGTTCCAGCGCCGCCTGCCAACGGCGACACGGCTGACGGCCCGCCCGCTCTGGACCGCTATTGCGCTGACTGCGACATCCGCTTCAGCTCGCTCAAGACTTATCGCGCGCACAAGACGCACTACTGCAGCACGCGGCAGGTGGTGAAGGGTGCGGGCGCACGCAGCGGCGGCTCCGTCACATCGGGCTCCGCGCCTCCGTCGCCGGGCCCAACGCCACCGGCGCCGGCGCGCGCCGAGTACGCGCTCGCGCTGCCCACCAACCCCATCCTGATCCTGCCGGTGGGGCTACTGCGCAACGCGAGCACGCTGCCCGGTGCAACGCTGCCCGATCCGGACGCGGCCTGCTTCCTGCTGCCCAACGGCACGTTCCAGCCGCTGTCGCAGGCGTTGTCGGGCGTGGACGGCGACTCGGCGCGCGGCGCCGTGCTGCGGTCGGCAAACCGCGCGCGCGAAGCGGCGCGTGACGGCACCGTGCCGCTCGATCTGAGCCTGCGCCGCTCGCCCGAGGCGGCGCCTGCCGACGACCCCGAGAAGGAGAACCGGCTGCGGTCGGCGACGCCGGAGCAGATCGTGTGCGCGCCGTCCCTGCCGCCGTCACCAGGCACGCCGTCCCCGCGGCGCTCGTGCTCGCCGACCGCCACCGAGAGCTCGCCCAAGCGGCGGCGGCGCTCGCGCGGGCCGACGCCCAAGCCGCCGTCACCGCCCGAGGAGAAGTACCGGCCGGAGGAGAGGTTCCCTGCGGCGCCACTGCCACCGGCTCTGGCGCTGCGGCTTGCAGCCGAGCTGCCGTCGCCGACGCCCTCGGTGGTCGTCAAGCAGGGCGTGTCCAAGTGCAAGGAGTGCAACATCGTGTTCTGCAAGTACGAGAACTACCGCGTGCACAAGCGGCTGTACTGCTCGGCGGGCGGTGGCGAGGAGCGCGCCAGCCCAGCGCCGGAGCCCGGGCCGCCGCCGCAGTACCGGCAGCTGATCTGCCTCGCATGCGGGATCCACTTCAGCTCGCTGGACAACCTTCAGACGCACCAGTCGTACTACTGCACGAAGCGCGAGACGCGCTCCCCGCGAGGGCCAGAGGCGCGCGGGGGCGGCGCGGGCGCTGCGGGCGGCGGCGAGGGTGGGTGGAAGTGCCCGTGCTGCGAGGTGGTGTCGCCAACGGCGGCGGCGGCGCAGCGGCACATGGAGGCGCACGCGGGCGTCAAGGCGTTCCGCTGCACGATCTGCCGGTACCGCGGCAACACGCTGCGCGGGATGCGCACACACATACGAATGCACTTCAACAATAAGAAACCCGCCGACTTGCAGGAGGAGAGCTACATCGCCTGCGTACTCGAAGACGACAGTCGCGAGACCACTTCCCCGAGCCCGGCGGCGGGCGACCGCATCCACCGCTGCAGCAGCTGCGCCTACACATCCACGTACCGCGGCAACGTCATCAGACACGCGAGACTCGTCCACGCGACCGACGAGCCAGAAGAAGACAGCACGTCCCACTCGTCGCCCTCTCTCGCTCCCACACCAACCATAGACATTAAAAAGGAGCCCGACACGGAAACGCCCGAAGAAACGCCTAACTACTGCAAATCCTGCGATATATCATTCAAGTATGTCAACACGTTTAAGGCTCACAAGCAATTCTACTGCACGGCTAATAACCAGGAGGCGGCTGCGAATAACAACGTCCCTGCTCCGCCCAGGGTCGGGGACACTCCTGTGCTGTAA
Protein Sequence: MCVRIPRSVLPRYRQIVQRNALTPACASMCRCVAAAVGDTTSQHGHFHPPSPPPAAPAPPPRASGPRASEDEEWGNDSEAMPGEPRTPSSGGERAASSGGGSPASRDSPAASPPPRLRLNTALATDPALAPSAVRLKREPATPSPPPAPVATPPAPRDYLAAAAAAFPGLFPTAAPGYVCKPCGIRYSSLSTLQAHQEHYCSNRPPKPPSTDSPNDANADESSGDSKTPRPPSKQYACAQCSYSADKKVSLNRHMRMHSSSPVAAAPVPAPPANGDTADGPPALDRYCADCDIRFSSLKTYRAHKTHYCSTRQVVKGAGARSGGSVTSGSAPPSPGPTPPAPARAEYALALPTNPILILPVGLLRNASTLPGATLPDPDAACFLLPNGTFQPLSQALSGVDGDSARGAVLRSANRAREAARDGTVPLDLSLRRSPEAAPADDPEKENRLRSATPEQIVCAPSLPPSPGTPSPRRSCSPTATESSPKRRRRSRGPTPKPPSPPEEKYRPEERFPAAPLPPALALRLAAELPSPTPSVVVKQGVSKCKECNIVFCKYENYRVHKRLYCSAGGGEERASPAPEPGPPPQYRQLICLACGIHFSSLDNLQTHQSYYCTKRETRSPRGPEARGGGAGAAGGGEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEDDSRETTSPSPAAGDRIHRCSSCAYTSTYRGNVIRHARLVHATDEPEEDSTSHSSPSLAPTPTIDIKKEPDTETPEETPNYCKSCDISFKYVNTFKAHKQFYCTANNQEAAANNNVPAPPRVGDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143470;
90% Identity: iTF_00818715;
80% Identity: -