Hfas015969.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990220.1:4310007-4312406[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.2e-06 8.1e-05 23.0 2.0 1 23 6 29 6 29 0.95 2 19 0.00019 0.013 16.1 0.5 2 23 35 57 34 57 0.95 3 19 9.1e-06 0.00061 20.3 0.2 2 23 66 88 66 88 0.97 4 19 4.5e-07 3e-05 24.4 1.2 2 23 97 119 96 119 0.95 5 19 2.7e-06 0.00018 21.9 2.8 2 23 127 149 127 149 0.95 6 19 5e-06 0.00034 21.1 0.5 2 23 157 179 156 179 0.96 7 19 9.3e-07 6.3e-05 23.4 3.9 1 23 185 208 185 208 0.98 8 19 0.00038 0.025 15.2 0.8 2 23 243 265 242 265 0.96 9 19 0.0038 0.26 12.0 1.1 1 23 295 318 295 318 0.98 10 19 0.18 12 6.7 1.0 2 21 326 345 325 346 0.93 11 19 0.023 1.5 9.6 1.9 2 23 355 377 355 377 0.94 12 19 0.037 2.5 8.9 6.4 1 23 401 424 401 424 0.97 13 19 0.00046 0.031 14.9 0.8 2 23 431 453 430 453 0.95 14 19 9.6e-05 0.0065 17.0 2.2 2 23 460 482 459 482 0.94 15 19 0.00025 0.017 15.7 2.2 1 23 488 511 488 511 0.98 16 19 0.2 14 6.6 4.8 2 23 519 541 519 541 0.95 17 19 0.00065 0.043 14.4 0.2 1 23 548 571 548 571 0.96 18 19 1.1 77 4.2 0.3 1 11 578 588 578 601 0.77 19 19 0.0012 0.08 13.6 2.8 2 23 617 639 617 639 0.96
Sequence Information
- Coding Sequence
- ATGTCGCAAGGAGACTTCATTTGCGACTACTGCAGCCGCTCCTTCACTAGAAAGTACAACCTCCAGACGCACATCGAAAACTATCACGTCAACTCTACATGCTACTGCGAAATTTGCGACCAAAAATTCGGGAGCCCCAGCGGCCTGCAGCTACATCTCTCGCGAGGGCACAACCGATTTGGCCAGCCGCTCCCCGAGTGCGATATCTGCGGACGCATATTCACCAGAAAACAAAACATTATGTCCCACATGATCACCGTGCACCTACAAGGCGTCGGGCCGGAAATACGGTGCCGAGTCTGCGGGAAGACTTTCACCACAGAAAGGAATCTGAAAAGACATATCAAGCTGTTGCACAACCCTGATCTCCAGTACCCTACCTGCGATGATTGTCACAAGTCGTTCAAAAGCAAACATTCGCTGATAGCTCACATGCAGGCCGCCCACAACTGCAACGACAACTCTATAAAATGCTACGTGTGCGAGAAGGTGTACACTAATAATCGGAACTTGAAGCGGCATATCGAAATGTTGCACGGGGAGAAGGAAGACCACAGATGCCATATCTGTCCTAAAGTTTACACCTCTAATCAGAGCCTCAAGCGGCACATTAAGACTGCGCACAATTTCGATGAAGACAGCATCAAATGCGAGGTGAAATTGGAAACGGAGAACATAGACTGGCATAGCGACAATTCGGATGATACGTATGAATCCAATACGATCACTTGCGAGGTTTGCAACGAAGCTTTCAGCGAAGAGTCCTGCCTGCGCCAACATGTAAAGAAGGAGCATACGTTCGATGCCTTCTATGATTACTGCAAAAGCTATCTGCTTAGACAGGCGGATGTAGATCAAGCAGAGACGAACAAGCGCACGGTTTACAAATGTGAGTTCTGCTTCACGGGCTACTTCGACGTGTACGAGCTGAAAGATCACATGAAGGTGAACCACGATACGGATTACAACTTGTCCACATGCAACGTGTGTTTCAGCAAGTTCTTCAGCAAGGAAACCTTGACAGAGCACAAGAAGATATGCCTCCCACCGCCCAACGTGAACTCGTGCAGCCACTGCGACAAATTGTTCACTGACATATCCAGTTTGGCGTTCCACACGAGAATTTTCCATCCGCAAGCGCAACTCGCCGATTCTCACATAACTTCGACGAGATCCGACTACGTCGCCGTCCAGAGCTCCTTCAAGTGCGAACACTGCAATCGTTTGTACTATAGCGACAGGTCGTTGAAGCATCACATCAAGCTGAAACACACGACCGACGAGGCGGTCGAGTGCGTGTTCTGCAACAAAATCTGCAGCAACAAATATTATCTCGCGTCGCATATCAAAATCGTCCACAGCATCGAAGATCTCTCCAAATGTGACTATTGCGAGAAACAGTTCAAGTCCAAGCGTAATATCAGGAGACACATCGAGTACACGCACATGGGAATGCAAAGGTATAAATGTGTCGAATGCGAGACACTTTTCAAGGAAAAGCGCAGTCTCAGGAAACACGTACGGACAAAACATCCCAACTCTGCATCGTTTCCGCAATGCCACATCTGCTACAAGAGATTCGAATCGGCAAAGTCATGTAAAATACATCTGAAGTTACTGCACTCTTTCAATATGAACACGTATCCTTGCGATCTGTGTTCCGTGTCGTTCGGATCGAAAGAGACTCTCAAAATACATTTGGAGTCCAAACACTTGGCGGAGGACGAAATATACAAATGCGAAGAGTGCAACCTGATCTTCCAGGGGACTCAAAGGTTCGAAGAGCACAACGAGGCGAGCCACGCCACTATCGACGCTGTGCCGAAGCAAAAAGCACAGACACTGCCCCGTTGTGTGATTTGCATGAAAGACTTCAGCACGCGTAAGACATTGCGACGGCACATCAAGAAGTTCCACGAGGAGTTCCAAGCGGAGGAGCTCGCTAACTTCGGTTTCAGGAAGCGAAACTTCATAGTCGATTGCGAAGACTGTCTCAAGAACTTCGCAGACGATTACTACGTGAACGCATATCACAAAGTGAAACATTTGAAAGACTCTGTGGTTTTCAAATGCGAGACTTGCCATTCTGCTTACAAGTGTATAGAGTTCGCAGTCCAAAGACATAGGATCGCAAACTTTGATACGAGCAAGCCTAAATTAATGTTGAGCGATCTCTGCACCACTCATCTGAGTGGAGACGAGGCGACCTATTCAGGGTTCGGCTCTTTGCATGAATATATGGAACCGGAGAGCACCACTGCCGAAGTCAAGATAGAACCGAGCGATGGCATGGTACCAGATCAGACGGATGAAATGAAAATAGAACCTGTGTCTTCGGAATTTGCCCCGGATGAGGTTAAATTGGAGCCGGAATGTATCTATAAGATTTCCAGCACTTGA
- Protein Sequence
- MSQGDFICDYCSRSFTRKYNLQTHIENYHVNSTCYCEICDQKFGSPSGLQLHLSRGHNRFGQPLPECDICGRIFTRKQNIMSHMITVHLQGVGPEIRCRVCGKTFTTERNLKRHIKLLHNPDLQYPTCDDCHKSFKSKHSLIAHMQAAHNCNDNSIKCYVCEKVYTNNRNLKRHIEMLHGEKEDHRCHICPKVYTSNQSLKRHIKTAHNFDEDSIKCEVKLETENIDWHSDNSDDTYESNTITCEVCNEAFSEESCLRQHVKKEHTFDAFYDYCKSYLLRQADVDQAETNKRTVYKCEFCFTGYFDVYELKDHMKVNHDTDYNLSTCNVCFSKFFSKETLTEHKKICLPPPNVNSCSHCDKLFTDISSLAFHTRIFHPQAQLADSHITSTRSDYVAVQSSFKCEHCNRLYYSDRSLKHHIKLKHTTDEAVECVFCNKICSNKYYLASHIKIVHSIEDLSKCDYCEKQFKSKRNIRRHIEYTHMGMQRYKCVECETLFKEKRSLRKHVRTKHPNSASFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKETLKIHLESKHLAEDEIYKCEECNLIFQGTQRFEEHNEASHATIDAVPKQKAQTLPRCVICMKDFSTRKTLRRHIKKFHEEFQAEELANFGFRKRNFIVDCEDCLKNFADDYYVNAYHKVKHLKDSVVFKCETCHSAYKCIEFAVQRHRIANFDTSKPKLMLSDLCTTHLSGDEATYSGFGSLHEYMEPESTTAEVKIEPSDGMVPDQTDEMKIEPVSSEFAPDEVKLEPECIYKISST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209552;
- 90% Identity
- iTF_00818503;
- 80% Identity
- iTF_00818503;