Hdia023483.1
Basic Information
- Insect
- Hydrotaea diabolus
- Gene Symbol
- -
- Assembly
- GCA_963513945.1
- Location
- OY740719.1:187760705-187763140[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.21 12.9 5.6 3 23 248 268 246 268 0.97 2 12 0.012 1.1 10.8 2.3 1 23 274 299 274 299 0.93 3 12 0.011 0.93 10.9 0.2 3 23 308 331 306 331 0.93 4 12 0.00049 0.042 15.2 2.3 1 23 342 364 342 364 0.98 5 12 3.4e-06 0.0003 21.9 0.2 1 23 371 393 371 393 0.98 6 12 0.016 1.4 10.4 0.1 1 23 399 421 399 421 0.98 7 12 0.01 0.88 11.0 4.8 1 23 427 450 427 450 0.98 8 12 0.012 1 10.8 2.4 1 23 456 478 456 478 0.95 9 12 0.00027 0.024 16.0 2.7 2 23 485 506 484 506 0.96 10 12 1.2e-06 0.0001 23.4 0.4 1 23 610 633 610 633 0.97 11 12 0.0061 0.52 11.7 5.8 1 23 639 661 639 661 0.97 12 12 5.5e-05 0.0047 18.2 2.2 1 23 667 689 667 689 0.96
Sequence Information
- Coding Sequence
- ATGGATATTCATTCCATTTGTCGTATTTGTCTAGAATATCTTCAAAATGGCAATGCttacgatttatttttaataccgGGACTGGCCAAAAAATTGTGTATGTGTACGGCACTGTCAGTGGAACCGCAGGATGGGTTCCCCAAAAATATATGTGGAGTCTGCTATACACGCCTCAATGATATGTCGGATTTCCAAAAACTATGCGTCGATTCTGTGCAAAAGTTTCAAGAGCTCGTGACAAGTCACACAGTCCACTGTGCCCCTACCAACTCCTTTGACATTATGGAGGCGCCGTCAACAGAACCAATTGTAGGTGTTGAAGTGGGATTGCCGGACGATGACGATGATAACTTGGATTTCGACCCGTTGCTCACTAATCACAAGATGGAAATGATTGAAAACGAAGAGGATGTCTTTAAGATGCTGGAAAATGTTGAcaaagaggaaccagaagaggtggaAACAAAAGTGGAGAATTTGGAAAGCAATGATATGTTTAGTGACGAGTCTAGCGATGAAGACAAAGAGAGTGacgatgattttcaatttcCTGATGcaaatgatgacgacgacgacgagagCGACAGTGATGACGATAAACCTCTGGCATCGAGATTGAGAAACATTAAGAAGGAGTACAAGGATGATAATGCagacgatgatgatgaaaagGATCCCAAGATTAAACCGAAACGAAAGCGTATACCAGCTGCTGAACGTCACTTGCATCGCATCATTGACTGCCATATTTGCCaccagaagtttaaaaaaaccaagAACTACGAGGAACATATGAAGTACCATAACGACAAATTACCCTTTCAGTGTGAAGTGGAGAATTGTAAGCGCGGCTTCACTACAGCGTATGGTCTACGCTTACATGTTGAGCACTGCCATGATGAAACAGTAGACAAAATCCCTTGTACCCAAGAAGGTTGTGATATGACGTTTACACGACGTCGTATACTAAACTGGCATTTGAAGAGAGTACATAAGATAGCAAAAGAGGATGTGCCAAAAACATATCCTTGTACTGAATGTGAAAAGGTATTCAAGTGTCCTATGGCTTTGAAAAAACACATGTTCAAACACACCGGCCAAGAACTACCATTCCCCTGCAATATTTGTGGCAAGCGTTTTGTTATTAACAGCGCGCTTAAAGACCATCTTATGCGCCATGctggaattaaaaattatgtGTGTCCGTACTGTGGCGTGGGCAAAACAACACGCCAAGAGTGGAACACTCATATTGCCACACATAATACTGAGAAGAAGTTTAAATGTCACCTGTGTCCACATGCATCTCATAATAAACAGAATCTGCGAATGCATGTTCGTGTCGTCCATGAGAAGATTAAGGATTATGCTTGCCAGTACTGTGGTAAGACGTTTGGTAAATCAAATGCCTGCAAAATGCATGAAATGACGCATACTGGAGAGAAGAGATGTGAGTGTAAGGTATGTGGAAAGCGCTTCCTTTATCCCAAAGGACTAACGAAACATTTAAAGACACATGAAAAACGAGTCTTGAGAGCCATAGAAGTATATCGTAAAAGACAGACAGAACTTGGTGAAGGACCATCAGAGCAAACAGAACCTATTCCGGAGTTGCCGAATCCGGAAAATACCCAAGAGTCACACCAGAAAGTTGCCGACGAGATCCTTAAGGTATGTGCCGATTCAGTAAATTCCATTCCGAAAGATCCTAGACGCGTTGAACGTGTAGATATAGCAGACTTGGCTGGTACTGCGGTAAATCCTATACCCCAGATGGCTTTGCCATCGTGGTCGcctcaaattaattttatgatgAAGGAGGGCAAATACACTTGCCCCGATTGTGGTCAAGGCTTCAATGGTTCTGGTAATCTGAGAAGACACCACAAAATAGTCCATCAAGGCGTCAAAGATTTTGCCTGTCGTTTCTGTCATAAACGCTTTGCTAAAGCTCAGACGTTGAAACATCACGAAATGACTCATACCGGCGAAAAACCACATGCATGCACACATTGTGATATGCGTTTTATTCAGGTGGTAGCTCTAAAACGTCACATGAAAGTGCATCAAGAACGTGCCacttttgtaccctccaccgtttATCAAGCTAAGGAAGAGCTGGCACTACAAGAACGTAAAAAATACCAAGCAAAGCGAATGGCCGAAGAGGAGCGTGAAGCAATAGCAGAAGAAGCACGAAAACAATTGGAAGAGTTAAAGAAACAGGAAGAGGACTTGCAAAGAAGACAACGAGAAGCTCTAGCGAACGTTCCTAAAGCGATTCCAAAGGAACGTCTGCCGCCTGGATCTGATATTTCAATTGCTACGAATGTGCTGCCAACCGATCTGGCCACAATTACTGATCCAAACACTGGAGGATTGGTCACCCCCAATGAAGATTTAAAGCAGGAAGAGGAAGATGAACTtagtttttaa
- Protein Sequence
- MDIHSICRICLEYLQNGNAYDLFLIPGLAKKLCMCTALSVEPQDGFPKNICGVCYTRLNDMSDFQKLCVDSVQKFQELVTSHTVHCAPTNSFDIMEAPSTEPIVGVEVGLPDDDDDNLDFDPLLTNHKMEMIENEEDVFKMLENVDKEEPEEVETKVENLESNDMFSDESSDEDKESDDDFQFPDANDDDDDESDSDDDKPLASRLRNIKKEYKDDNADDDDEKDPKIKPKRKRIPAAERHLHRIIDCHICHQKFKKTKNYEEHMKYHNDKLPFQCEVENCKRGFTTAYGLRLHVEHCHDETVDKIPCTQEGCDMTFTRRRILNWHLKRVHKIAKEDVPKTYPCTECEKVFKCPMALKKHMFKHTGQELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHIATHNTEKKFKCHLCPHASHNKQNLRMHVRVVHEKIKDYACQYCGKTFGKSNACKMHEMTHTGEKRCECKVCGKRFLYPKGLTKHLKTHEKRVLRAIEVYRKRQTELGEGPSEQTEPIPELPNPENTQESHQKVADEILKVCADSVNSIPKDPRRVERVDIADLAGTAVNPIPQMALPSWSPQINFMMKEGKYTCPDCGQGFNGSGNLRRHHKIVHQGVKDFACRFCHKRFAKAQTLKHHEMTHTGEKPHACTHCDMRFIQVVALKRHMKVHQERATFVPSTVYQAKEELALQERKKYQAKRMAEEEREAIAEEARKQLEELKKQEEDLQRRQREALANVPKAIPKERLPPGSDISIATNVLPTDLATITDPNTGGLVTPNEDLKQEEEDELSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019615;
- 90% Identity
- iTF_00679772;
- 80% Identity
- -