Hdia006561.1
Basic Information
- Insect
- Hydrotaea diabolus
- Gene Symbol
- Rfx2
- Assembly
- GCA_963513945.1
- Location
- OY740716.1:235267611-235291444[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 1.1e+04 -2.1 0.1 3 34 10 42 8 52 0.78 2 3 0.7 7.8e+03 -1.6 0.2 23 41 150 168 137 173 0.75 3 3 4.5e-38 5e-34 117.6 0.2 3 78 390 465 388 466 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACGACTTGCTTTggagcaacagcagcagcagcatttacacCAACATTTGCAGCACTTGAATGCGACAGCATCGTCGCCAACGTCGTCCAGCTTCAATCATTTTCTCGAAAAGTGTCGTTGTAGTGTTCGTGCCCACCCAAATTGCATACAACAGGCCCCACAAACGGTGCAACATTATCGTCATCCacaccaacaacaactacagcaaCAGCAGGCATCTCAGCAACAACACAGCCAGTTGATACAGCAACAGACATATCCctatcatcatcagcagcaacatcatcacCGGCAACATCAAGCCCGACATCAGGCACCAGCAACGCAACAATATCTGCATTCGCATACGCATCATCCACGTCTGGTCTCGCCAGTTTTATCCGTTCTCTCAACGTCGCACCAGCAGACGCAGTCACATCCGAAGCAACACTCAATAGCCCATCACCTGTATCATCAATATCAccaacatcatcatcaccatcgccAGGCCCTCGTTGCTAGCGTCTCGGCAAATTGTACAactattgctgctgctgctgccgccgcgGCTGCATCATCGTCATCGTATTTTCCATCGCCATCGCCTTCACCATCGCCTGCAACACAAACACCGCCGCCAACGATTCCGATTCCACCTGCGACGGTATCCACCATGTATCGACGTCATAACAATCTATCGTATTGTGGCGTATCGAGTCAGGAACCCGGTCAAAACTACCAAGTACAGTATGTGGACACGGAGTTATATCACAGCAATTCCAGTCAATCTCAAATGACATATCCCTTTTGTCCAATCGGAGATTATCAGCCCAATGGACAATCCTACTATACGACAACACATACGGCCAACTATTCCGCGACGGTTCCACTCAATGCGCCGACAGTACCGCATCCCTCCACATTGCCGTACATTGTGCCGACGGAAGAAACATTGCTGCTGAATGCTTCCTCACAGACTCACAGCAGGGACTCACCACACAGTCTGACAGAAGTGGCATTCATACCGGAGGCACACAGTACATCACAAACGCCAACCTCGACTACAGCGAATTCGGTGAATGTCGGCAGCATTGGACCGGCGGGCGGAAGTAGTGGCGGCAGTGATGTCTCGCCGGATAATGAACATGGTATGATGGGAAATACCAATAAAATTGCCTCAGCAACGATCAAATGGTTGTCCAGAAACTACGAAACTGCCGAAGGTGTCAGCCTGCCACGTTCAACGTTGTACAATCATTACATTCAACACTGCAACGAAAGCAAAATAGAACCCGTAAATGCTGCCAGCTTTGGAAAGCTAATACGTTCGGTATTCTCTGGACTGAGAACTCGACGTCTGGGAACGCGTGGCAATTCCAAATATCACTATTACGGCATTCGCATAAAGCCAGAGTCGATTCTCAATCAAATGATGGATGAAAAGCCGGCCAACACCTTTCAAACGCACCATATCCATGCATCAGGTCTAACTGGCGATCCAACAAATTCAATGATGGCCTGTAGTTCCAGTAGCATTGCCGTAGCGGCCAGTGTCCATGCGGCTAATGCTGGTGTCAGCACCAGTAGTGCCGGCGGCGgggctggtggtggtggtggtataCACATAAACAGATGCCCCAAAAAGTCCCACACTTTTAAATCGGAAACCCACGAAGCCTGCGGTCATtttttgggtAATGGAACCGGCGCGATACCCTCATTTCCGCCCATAGAACTGGACAACACATTTGATAGTGAACTCACCGCCGACGATGTGGAAACATTTCGCTCTATGTATCGGGAACACTGTGAAAACTTTCTAGATGCCGTCCTCAATTTGGACTTCAATACTATTGAATTTCTTTGGCGGGATTTCTGGCGAGAGAATACCAATCTGGATAAATGCGCCGAGGAGGAGAAGTACTTGAGTAAGACGAAATTATATCTTCTATGCCATTGTTCGGGTGTTCAAAAATTTGTGCGAGAAATCGACTATCAGTtctatcaaaatatggttgatgtCATCATACCAGATGTTTTGCGCTCCATACCCAACTCTCTGACTCAGGCCATACGCAATTTTGCCAAGAACATGGAAATCTGGTTATGTGAATCCATGATTGGTGTGCCGGAACGCATGGTTCAAATCAAATCATCAGCGGTGTCGGCGTTTTGTCAAACACTGCGCCGCTACACATCGCTTAATCACCTGGCCCAAGCGGCGCGGGCCGTACTTCAAAATAGTTCACAGATCACGCAAATGCTGAACGATTTGAATCGTGTGGACTTTCATAATGTTCAGGAACAAGCCGCATGGGTATGCCAATGCGAACCATCTCTCGTTCAGCGCCTCGAGAACGATTTTAAGACGACGCTGCAGCAAcaatgttcgctggaacaatGGGCCACTTGGTTACAGGTGGTCGTTGACTCTGTCTTGCAGGAGCATTTCGGGAAGCCAAGCTATGCAAAAGCCGCCcgtcaatttctattgaaatggaGCTTCTACAGTTCAATGATAATTCGTGACTTAACGCTACGATCGGCTTCCAGTTTTGGTAGTTTTCATTTGATACGCCTGCTATACGACGAATATATGTTCTATCTGATCGAGCATAAAGTGGCCGAGGCTCATCAGAAGACAGCTATAGCTGTAATATGTGATCTTAAGcaaaaagAGGTTGAATTCGATTTTGGCTATCAACTGGAATTCATTGCTACCGATGCCATAGGATCAGAGCGCGGAGCAAAACGCATGAAGCACGAATGA
- Protein Sequence
- MHSRLALEQQQQQHLHQHLQHLNATASSPTSSSFNHFLEKCRCSVRAHPNCIQQAPQTVQHYRHPHQQQLQQQQASQQQHSQLIQQQTYPYHHQQQHHHRQHQARHQAPATQQYLHSHTHHPRLVSPVLSVLSTSHQQTQSHPKQHSIAHHLYHQYHQHHHHHRQALVASVSANCTTIAAAAAAAAASSSSYFPSPSPSPSPATQTPPPTIPIPPATVSTMYRRHNNLSYCGVSSQEPGQNYQVQYVDTELYHSNSSQSQMTYPFCPIGDYQPNGQSYYTTTHTANYSATVPLNAPTVPHPSTLPYIVPTEETLLLNASSQTHSRDSPHSLTEVAFIPEAHSTSQTPTSTTANSVNVGSIGPAGGSSGGSDVSPDNEHGMMGNTNKIASATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNESKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPESILNQMMDEKPANTFQTHHIHASGLTGDPTNSMMACSSSSIAVAASVHAANAGVSTSSAGGGAGGGGGIHINRCPKKSHTFKSETHEACGHFLGNGTGAIPSFPPIELDNTFDSELTADDVETFRSMYREHCENFLDAVLNLDFNTIEFLWRDFWRENTNLDKCAEEEKYLSKTKLYLLCHCSGVQKFVREIDYQFYQNMVDVIIPDVLRSIPNSLTQAIRNFAKNMEIWLCESMIGVPERMVQIKSSAVSAFCQTLRRYTSLNHLAQAARAVLQNSSQITQMLNDLNRVDFHNVQEQAAWVCQCEPSLVQRLENDFKTTLQQQCSLEQWATWLQVVVDSVLQEHFGKPSYAKAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLYDEYMFYLIEHKVAEAHQKTAIAVICDLKQKEVEFDFGYQLEFIATDAIGSERGAKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01374713;
- 90% Identity
- -
- 80% Identity
- -