Hcyr020569.2
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282516.1:52611524-52629517[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-11 1e-07 32.0 0.0 1 38 556 594 556 599 0.89 2 4 1.7e-13 3.2e-10 40.0 0.0 2 39 611 648 610 651 0.94 3 4 2.1e-17 3.9e-14 52.6 0.0 1 45 665 710 665 710 0.98 4 4 2.1e-19 3.8e-16 59.0 0.0 1 45 717 762 717 762 0.97
Sequence Information
- Coding Sequence
- ATGGTGACATCCAAGCCGTCACCCGTTGCCGCCAACACCGCTTCTCGCCCGCTGAAAACTTTTGATGGTCTCTTGCGTACCGCGGAACAGTTGAAAATCAAGGGTCtgtgcgaaaccgccgaaaacgCCGATGATTTGAATGATGCTGCCACAGCAACGATAACCGTATCCGAGAATATACAACAGGCCGTGGTCGGTAATATTGTCAATGCCACAGTAGTACCCGGTCAGTCCTCACCACCCATACCCCAGCAAcaccatcaacagcagcagcaacaacagcagcagcagcagcaacaattgcagcaccaacaacaacagcagcagcaacaacaattgacCAGTACTGCTGTCCTCACACATGCCGTCAGTCCCAACAGTGCCCAGCAATTGGCAGCAACCGGACAATTGGTAACCTCCACACCCACCTCgtcccaacaacagcaacaccagcaACTCGGTCGCAAGTCGCGCGTACGCAAACGTTCGAAATCGCCGGAAATCATCTTGTCCCATCACGAACAGGTCCAGCAACAGCAGAATCAGCAGCATCCCCAAGCCATCCtaatacaaaatcaaaatcagGCGGCCATTGTCAGTCTACAGCAGACATCGGCTGGCAATTATATACCGGTGTCCGGTGTTCAAACGGTTACCACCAGCGTAGCGGGCGGTCAGGCACAACAGCAGGGCGGCACCACCATAGTGACGACCGGCGAGGATTCCGATTCGGAAAAGCCGACATTGCAGAAAATTTGCAAAACCGAAGCATCGTCAGCTTCGCCAGCGTCCGCCTCATCAACGTCGGCGTCAAATAATGCTGGTGGCGTAACTACGGTAGCAGCACCCGGTACAGCGATTGTAACACAAATTGTAGTAGCTAGAGACGgaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGAACGGTGGCATGCTGGGAGTCCCAATGGGCTTCTTGGACTTTGCACCCGAACCACCGGCCCCATCAGCGACCCCAGTTACGGTTACAGAACACGTGGATTTGTCATGTAACCCCAGCACGGATACCAGAGATCTATCAAATCCCTCGGAACCGCTCGATATCGACAATCATTTGGCCCAACACATGATACAACGACTCGATCAATCTCCCATGCACTCCATGCACCATCAGACCGGTGACGAATCAAATTCGAATCTGGTCCAACACATAAAAAGCGAAGTCATCGATgccaaacaacagcagcaggcccagcaacaacagcagcaacaggcCGCAGCCGCCGCCCACCATCAAGCTCAACAGCAACATCTGCATGCACAGCAATTGGCTGCGGCGCAGGGCCAAAGCCATCAGCAGCAGTCGCATCAACAGCAGTCGCATcagcaacaccaccaacaggcccaccaacagcagcagcatcatcaggAGATCACGGGAGCCACCGTAATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATAACGCCGGAAATTGTAAATATGATGACCTCCGGGCATATGGATATGTATAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGCTCACCACATGATCAAAATGAACCGCACTATACCAATTTAGATCAGCAGCATGGTGGAGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCCACCACCCTATGGCAACGAGCCCATCGCATGGGCATCGAGACACCGAAGAAGGAAGGAGGCACCAAATCATGGAACGAAGACTCGCTCAACAATGCTTTGGAAGCCTTACGCTCTGGACAAATATCAGCCAATAAAGCATCGAAAGCCTTTGGCATACCTTCATCGACGCTCTATAAGATAGCACGACGTGAGGGTATACGATTGGCAGCGCCTTTCAATGCCGCCCCAACCACCTGGACCCCCGAAGATTTGGAGCGTGCATTGGAGGCCATACGTGCGGGGCATACATCCGTTCAGAAGGCAAGTGCTGAATTTGGCATACCAACAGGCACGCTGTACGGTCGTTGTAAACGTGAAGGCATTGAGCTGTCACGTTCGAATCCTACTCCATGGTCTGAAGATGCTATGAATGAAGCTTTGAATTCAGTGCGCATTGGCCAGATGTCTATCAATCAAGCTGCTATTCACTACAATTTACCCTATAGCTCGTTGTATGGTCGCTTTAAGCGTGGCAAATACGATGTGTCCAATACCAGTGGTACGTCCATCAACAATACATCGGGCAACACATcgggtagcattgaaattattgagcATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCACCGCATCAGCACGGTGGCAGTAGTACACCGCAACAAAGCCAAACACCGCAGCATATACAGCAGCACGTAGTGCatatacaacagcaacagcatcatcagcaacagcagccaCAGCATGCGCAACATATCCAACAGCAACAAGATGTTGTCACCTCATCCAGTCAACAAGTTCAACAACAGCACGCCAGCAATTCAGCCGCAGCGGCAGCTGcatcacagcaacaacagcagcagcaacagattCAACAGATCTATCACCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MVTSKPSPVAANTASRPLKTFDGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVPGQSSPPIPQQHHQQQQQQQQQQQQQLQHQQQQQQQQQLTSTAVLTHAVSPNSAQQLAATGQLVTSTPTSSQQQQHQQLGRKSRVRKRSKSPEIILSHHEQVQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQAQQQGGTTIVTTGEDSDSEKPTLQKICKTEASSASPASASSTSASNNAGGVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGMLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSMHHQTGDESNSNLVQHIKSEVIDAKQQQQAQQQQQQQAAAAAHHQAQQQHLHAQQLAAAQGQSHQQQSHQQQSHQQHHQQAHQQQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTSGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQHGGSSTPQQSQTPQHIQQHVVHIQQQQHHQQQQPQHAQHIQQQQDVVTSSSQQVQQQHASNSAAAAAASQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00679396;
- 80% Identity
- -