Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000053.1:1519104-1521047[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.081 5.9 7.5 0.9 3 23 169 190 167 190 0.92

2 13 0.13 9.5 6.9 0.7 1 20 202 221 202 230 0.96

3 13 0.086 6.3 7.5 0.3 2 23 310 331 310 331 0.93

4 13 5.9e-06 0.00043 20.6 2.7 1 23 338 360 338 360 0.97

5 13 2.2e-07 1.6e-05 25.0 5.8 1 23 366 388 366 388 0.97

6 13 0.015 1.1 9.9 0.5 1 23 394 416 394 416 0.96

7 13 1.6e-05 0.0012 19.2 0.4 1 23 426 448 426 448 0.99

8 13 0.23 17 6.1 3.8 2 23 455 477 454 477 0.94

9 13 3.7e-06 0.00027 21.2 1.8 1 23 483 505 483 505 0.96

10 13 0.00022 0.016 15.6 2.9 1 23 511 533 511 533 0.98

11 13 7.1e-07 5.2e-05 23.5 0.0 3 23 541 561 540 561 0.98

12 13 1e-07 7.6e-06 26.1 2.8 1 23 567 589 567 589 0.98

13 13 0.00039 0.029 14.8 0.7 2 23 595 617 594 617 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.081	5.9	7.5	0.9	3	23	169	190	167	190	0.92
2	13	0.13	9.5	6.9	0.7	1	20	202	221	202	230	0.96
3	13	0.086	6.3	7.5	0.3	2	23	310	331	310	331	0.93
4	13	5.9e-06	0.00043	20.6	2.7	1	23	338	360	338	360	0.97
5	13	2.2e-07	1.6e-05	25.0	5.8	1	23	366	388	366	388	0.97
6	13	0.015	1.1	9.9	0.5	1	23	394	416	394	416	0.96
7	13	1.6e-05	0.0012	19.2	0.4	1	23	426	448	426	448	0.99
8	13	0.23	17	6.1	3.8	2	23	455	477	454	477	0.94
9	13	3.7e-06	0.00027	21.2	1.8	1	23	483	505	483	505	0.96
10	13	0.00022	0.016	15.6	2.9	1	23	511	533	511	533	0.98
11	13	7.1e-07	5.2e-05	23.5	0.0	3	23	541	561	540	561	0.98
12	13	1e-07	7.6e-06	26.1	2.8	1	23	567	589	567	589	0.98
13	13	0.00039	0.029	14.8	0.7	2	23	595	617	594	617	0.96

Sequence Information

Coding Sequence: ATGGAGCAACTAGTCAAAGAAGAACACCCCCAGCTCACAGCAGCTGAACTCCTCAATCTATGTCGCTCATGCTTGAAGCCCCACAAGCTCGAACCTGGCGATACATCCCCGCTATCCTTGGAAACCTACCCTCGAGGAATGCCCACCTTGAACATCATGCTGATGGAAACCACTAGGCTCAGGGTTCCTCCAGACAAGCTGATGCCCACTCATTTGTGTGTCTCTTGTGCAGCGTTACTTTATTCTTCTTTTACTTTCCAAAAGATGTGTATAGAATCTCATGAGAAACTCATTGTGTTAACTAATCAATTAGATCCTATATGTGAAACGCTTAGTCCAACGCTTCCTAAATCTGAAATCGATCTAAACATGAACTGGACGGagcaaaaaaatgttcaattgcTTCCTGTCGTTTTGCAAAATCAATCGATTCAGACCCAATTATCAGGAGACGTTTGCAACGTTTGCCAAAACGATTCTAAATCACTAGACAAGATTATTGCTTGTGTAAATTGTAATGAAACATTTAACGACCAAATTCATCATGCTAAACATATGTTAGATGTGCATGATGTCGTTCATAATGTCGATTCCGAATCGACGTATACTTGCCAAGAATGTAATTCTATTTTCGACGATTTTAAAGCTTATAATGAccatattgtattttgtaaatggaGCGAGTTGAAATTGAAACCTGAAACTGTTAATGTTTCACACGACGAAAATATGTCtgttactgaaaatttcaaaaatgatttttctgaTATGGAAGATAGTTATGTTGAAAATACTGATGACTTATGtgaatctgaaaatatcaatGTAACTCAAAAGACTGAATGTAgtgataaaaatgtaattataaacACTGAAGATCTTtcggacgaaaaaaaaacgaaaagttcTCCAAATTGTGATAACGCATATTGTGACATATGCAAGCGTCAATTTCCGTCTAATGCCATTTTCAAACAACATGCTGTAACACACACTCGCGAAATACCCATATATCGTTGCGATATATGCGGCAAAGAATTCACTAGAAACACTCACAAAAAACGACATCTTGTAGTACACCAAACCGTCAAAAACTTCAGTTGCCATTATTGCGACAAAATATTCTGCCGCAAAGACAATTTACAGAGACACATAATGTTGCATACGACTGCGAAATCTTTCGACTGTGACTCTTGTGACAAAAAATTCCTCACCGAATTCAAACTGGCCACCCACATGGTGGTACACGGcgcgaaaaaaaagtacaccAAGTCTTTCCAATGCGACGTATGCAGTAGATCGTACGCGCTAGAAAAAAGCCTAAAGGTCCACATGAGAGTCCACAACGGCGAAACGACAGTAAAATGCGAAATGTGCCCCGCCGAGTTCCACACCAAATGGCAAATGAAGGATCACACTTTCAAGTGCCATAACACGGAAAAGCGCTATCTATGTTCTGAATGCGGCAAGAAGTTTTATCGTATTGACTATTTCAGAATACACATGCGGAGACATAAAGGAGAGACTCCGTATAAATGCAGCTTTTGCAATAAGGGCTTTTTCCGGACTACGGACTTGAGGGctcatgaaaaatatcacacgggtgacaaaaataacatttgtaACATATGCGGGCTCGCTTTTACTAGGCCTTATGCTTTGAAGGTTCATTTGAGGGTGCATTCGGGAGAAAAGCCGTACTCTTGTAAGGAGTGCGGGAAGAAGTTTTCTCAATCGTATGATTTGAAATTGCATACGCGCAGACATACGGGAGAGAGGTTGAAATGTGATAGTTGCGATGAGGAATTTATTAGGGAGTATCTTTTGAGGCAGCATAAGAAGAAGGTTCATGGAGTTGTGACTGAAAGTCGCATCACTCGTTTGATTAAGAAAAAGGATAAAAAGAATCCTACTGTTAAACAGGAATTGTCGAGCCAAGATTag
Protein Sequence: MEQLVKEEHPQLTAAELLNLCRSCLKPHKLEPGDTSPLSLETYPRGMPTLNIMLMETTRLRVPPDKLMPTHLCVSCAALLYSSFTFQKMCIESHEKLIVLTNQLDPICETLSPTLPKSEIDLNMNWTEQKNVQLLPVVLQNQSIQTQLSGDVCNVCQNDSKSLDKIIACVNCNETFNDQIHHAKHMLDVHDVVHNVDSESTYTCQECNSIFDDFKAYNDHIVFCKWSELKLKPETVNVSHDENMSVTENFKNDFSDMEDSYVENTDDLCESENINVTQKTECSDKNVIINTEDLSDEKKTKSSPNCDNAYCDICKRQFPSNAIFKQHAVTHTREIPIYRCDICGKEFTRNTHKKRHLVVHQTVKNFSCHYCDKIFCRKDNLQRHIMLHTTAKSFDCDSCDKKFLTEFKLATHMVVHGAKKKYTKSFQCDVCSRSYALEKSLKVHMRVHNGETTVKCEMCPAEFHTKWQMKDHTFKCHNTEKRYLCSECGKKFYRIDYFRIHMRRHKGETPYKCSFCNKGFFRTTDLRAHEKYHTGDKNNICNICGLAFTRPYALKVHLRVHSGEKPYSCKECGKKFSQSYDLKLHTRRHTGERLKCDSCDEEFIREYLLRQHKKKVHGVVTESRITRLIKKKDKKNPTVKQELSSQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815282;
90% Identity: -
80% Identity: -