Hbet018696.2
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020003636.1:5049-6986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00029 0.39 15.2 0.4 3 23 169 190 167 190 0.93 2 13 0.084 1.1e+02 7.4 0.4 1 20 200 219 200 221 0.96 3 13 0.081 1.1e+02 7.5 0.3 2 23 308 329 308 329 0.93 4 13 2.7e-06 0.0035 21.6 2.8 1 23 336 358 336 358 0.98 5 13 2e-06 0.0027 21.9 6.6 1 23 364 386 364 386 0.97 6 13 0.011 14 10.2 0.5 1 23 392 414 392 414 0.96 7 13 8.3e-06 0.011 20.0 0.5 1 23 424 446 424 446 0.99 8 13 0.56 7.4e+02 4.8 3.8 2 23 453 475 452 475 0.94 9 13 4.4e-06 0.0059 20.9 2.0 1 23 481 503 481 503 0.96 10 13 0.00021 0.28 15.6 2.9 1 23 509 531 509 531 0.98 11 13 2.3e-06 0.0031 21.8 0.0 3 23 539 559 538 559 0.98 12 13 6.9e-08 9.2e-05 26.6 3.0 1 23 565 587 565 587 0.99 13 13 0.00037 0.49 14.8 0.7 2 23 593 615 592 615 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAACTAGTCAAAGAAGAACATCCCAAACTCACAGCAGCCGAACTCCTCAATTTATGTCGCTCATGCTTGAAGCCCCACAAGCTCGAACCTGACAATACGTCTCCGCTATCCTTGGAAACCTACCCTCGAGGAATGCCTACCCTGAACATCATGCTGATGGAAACCACTAAGATCAGAGTGCCTCCAGACAAGATGATGCCCACCCATTTGTGTGCCTCTTGCGCAGCGTTGCTTTATTCGTCTTTCATTTTCCAAAAGATGTGTATAGAATCTCATGAAAAAATCGTTGTGTTAACGAATCAGTTAGATCCTATATGTGAAACTCTTACTCCGACACTTCCTAAACCTGAAATCGATCTAGATTTGAACTGGACGGAGCAAAAGAATCTTCAATTGCTTCCGATCGTTTTGCAAAATCAATCGATTCAGACCGAATTATCGGGAGATGTTTGCAACGTTTGCAAAAACGATTCTAAACCGCTAGACGAGATTATTGCTTGTTTAAATTGTAATGAAACTTTCACCGACCAAATTCATTATGCTAAACATATGTTAGATGCgcataatgttaatattaattccGAATCGACGTATACATGCCAAGAATGTAATTctattttcgacgattttaaaacttataatgaccatattgtattttgtaaatgggACAAGTTGAAATTGAAACCTGAAACCGTTAATGTTTCACGCGATGAAGACATATCTGttaatgaaactttcaataatgatttttctgaTATGGAAGATAGTTATGTTGAAAATACTGATGATTTATGtgaatctgaaaatatcgaTGTAACTCAAAAGACTGAATGTAgcgataaaaaagtaattttaaacaCCGAAGATCTTTCGGACGTAAAAGTAACCAAAAGTTCTCCAAATTGTGATAACGCATATTGCGACATATGCAAGCGTCAATTTCCGTCTAATGCCATTTTCAAACAACACGCCGTAACACACACTCGCGAAATACCTATATATCGTTGCGATATATGCGGCAAAGAATTCACAAGGAACACCCATAAAAAACGACATCTCATAATACACCAAACCGTAAAAAACTTCAATTGCCATTAttgcaacaaaatattttgccgCAAAGATAATTTACAGAGACATTTATTATTGCATACGACTGCGAAATCTTTTGACTGTGACTCTTGTGACAAAAAATTCCTCACCGAATTCAAACTGGCCAACCATATGGTGGTGCACGGCACGAAAAGAAAGTACACCAAGTCTTTTCGATGCGACGTATGCAACAGATCGTACGCGttagaaaaaagtttaaagGTCCACATGCGAGTTCACAACGGCGAAACGACAATAAAATGCGAAATGTGCCCCTCTGAGTTCCACACCAAATGGCAAATGAAGGATCACGTTTTCAAGTGCCACAATGCAGAAAAGCGTTTTCTGTGTTCTGAATGCGGCAAGAAGTTTTATCGTATCgactatttcaaaatacacatgCGAAGGCATAAAGGAGAGACTCCGTATAAATGCAGCTTTTGCAATAAAGGTTTTTTCCGGACTACGGACTTGAGGGCCCATGAAAAGTATCACACGGGTGACAAAAGTAACATTTGCAACGTGTGTGGACTCGGTTTTACTAGGCCGTATGCTTTAAAGGTTCATTTGAGGGTGCATTCGGGAGAAAAGCCGTACACTTGTAAGGAGTGTGGGAAGAAGTTTTCTCAATCGTACGATTTGAAATTGCATACGCGAAGACATACGGGAGAGAGGTTGAAATGTGATAGTTGTGATGAGGAATTTATTAGGGAGTATCTTTTGAGGCAGCATAAGAAGAAGGTTCATGGAGTCGTGACTGAAAGTCGCATCGCTCGTTTGAATAAGAAAAAGGTTAAAGAGGATCCTACTGTTAAACAGGAATTGTCGAGCCAAGATTag
- Protein Sequence
- MEQLVKEEHPKLTAAELLNLCRSCLKPHKLEPDNTSPLSLETYPRGMPTLNIMLMETTKIRVPPDKMMPTHLCASCAALLYSSFIFQKMCIESHEKIVVLTNQLDPICETLTPTLPKPEIDLDLNWTEQKNLQLLPIVLQNQSIQTELSGDVCNVCKNDSKPLDEIIACLNCNETFTDQIHYAKHMLDAHNVNINSESTYTCQECNSIFDDFKTYNDHIVFCKWDKLKLKPETVNVSRDEDISVNETFNNDFSDMEDSYVENTDDLCESENIDVTQKTECSDKKVILNTEDLSDVKVTKSSPNCDNAYCDICKRQFPSNAIFKQHAVTHTREIPIYRCDICGKEFTRNTHKKRHLIIHQTVKNFNCHYCNKIFCRKDNLQRHLLLHTTAKSFDCDSCDKKFLTEFKLANHMVVHGTKRKYTKSFRCDVCNRSYALEKSLKVHMRVHNGETTIKCEMCPSEFHTKWQMKDHVFKCHNAEKRFLCSECGKKFYRIDYFKIHMRRHKGETPYKCSFCNKGFFRTTDLRAHEKYHTGDKSNICNVCGLGFTRPYALKVHLRVHSGEKPYTCKECGKKFSQSYDLKLHTRRHTGERLKCDSCDEEFIREYLLRQHKKKVHGVVTESRIARLNKKKVKEDPTVKQELSSQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815981;
- 90% Identity
- -
- 80% Identity
- -