Hten001149.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hydropsyche tenuis
Gene Symbol
-
Assembly
GCA_009617725.1
Location
VTON01000095.1:73878-79182[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.011 0.81 10.3 0.1 1 23 456 478 456 478 0.95
2 12 3.8e-05 0.0028 18.0 2.8 1 23 486 509 486 509 0.96
3 12 3.5e-06 0.00025 21.3 0.8 1 23 515 537 515 537 0.98
4 12 0.00033 0.024 15.1 5.1 1 23 543 565 543 565 0.99
5 12 1.9e-06 0.00014 22.1 2.7 1 23 572 594 572 594 0.99
6 12 0.00011 0.0081 16.6 0.3 1 23 600 622 600 622 0.93
7 12 0.00023 0.017 15.6 0.7 1 23 628 650 628 650 0.96
8 12 1.1e-07 7.7e-06 26.1 0.6 1 23 656 679 656 679 0.96
9 12 0.00014 0.011 16.2 4.9 1 23 685 708 685 708 0.96
10 12 5.3e-06 0.00039 20.7 2.2 1 23 714 736 714 736 0.98
11 12 6.5e-05 0.0048 17.3 1.1 1 23 742 764 742 764 0.97
12 12 0.0018 0.13 12.7 0.2 1 23 770 794 770 794 0.93

Sequence Information

Coding Sequence
ATGGATCCGAAAACAAATCCACATTGTTACGTGTGCAACAGTCGAGTGGGAGTTTCCATTAGAAACGCCGTCGAAATATTCAACTCTCAAAACAAGTTTCCGACTACGGACAGATCGCTTATCTCGTGTATGAACGGCGTTCTCAATCAAGAGATAGATAAGCAAAACACTCATTCGTTCGTTATATGCAAAAAGTGTTACAAACTGTTTCAGGAATACGACGAATTGGAATTTAGgATGATTGAAATCAAAGATGAAATGAATATGGAGTTTAAAAGGACTTTACAGAAACACGATATGAACATGGATTCGAGTTCGGATCTGGTTTCAGATAATGTATACTCGAAAGAAGGAGTCAAAATCAAAGAAGAGATCAATACGACCGATGATTCGAACTCTATGGAGTGGAGCAAGACGCCGACTTTTACagatattaagaaaatatcgCCGGCTCCCTCCAATCTTATAATCGTCGGGCAtaaagggaaaaaaatcacgattcAGAAGCCTGCGATAAAGGCTGGACAGcaaaagaataattttgatatatctaGTATAAAGCAAGAGAATAAATCGATACATttatctGACGACTCTGTCGATCTTCAATTGCAACAATTGCACCAAGAAAGTTTGGAAGCTGAAAAAGCCGAACAACCTCCTACTAAAATGGATAACCAAAACAACGACGATGTACAagagaaaaaaagtaaaaagaaCAAAAGTTCAGATAgcaaaaaagttatcgaatATTTGAGCGAAGTAGACGGAATTATCGTAAAAACGGAAGGCGAAGACAGAGGAGACGacgataaatatgtaattagcGAATTGGAAATCGTCGAGAATAGCAATTCAGATATGCAATTAGAAGAAGGCACAATTTTGAATACGAGCGACGGAggtattataaaagttttgcaaCACGAtggcaaaaatataatacaagacgaagaaggaaatttttatagaGCTAACGAAGACGGAAATCTCGAAATGATTTTACCGGAGGACGATGATTACGATGGTGATTTAGATGATGACGTCGTTCAATATGAAACAATCAACTTGAAAGaGGGGGTtagcattttgaaatttaatccgtcgattttaaacaaaaatatattcaaaaataaaaagtctaATGGTTTGGACGAGGAAGAAGATGtcaatgatgatgaaaatATGGaacgaataatatattattcgtgTCTGGCTTGCGGTTCGGCAGATATGGAAAAAAAGAATCAGGAAGGCGGTGAAAATGATGAAGCAGATGCATGCAAAGACGAGgacgagaaaatatttttaggcgACGCCAACATGATCATGGAACATATGAAAACCGTAcatagtatgaaaatttatatttgcgaAATATGTGGATATGTGAAGACGACAAAAGCTAGCCTTCTTGATCATTTATcCGATCATTTATCGTCAAAAAACGGTGATTTCAAATGCGAAACATGTTCGAAATCATTCGAAACACGAATCGCGTTAaagaaacatcaaaaatttcagcacTGGAAGACAAAAAACTTTCCATGCACAatctgcaataaaaaattctcTTCAAAGAACCTCTTAGAAGAACACACCAACATACACAAAGGCCTAAAACCCTACAGTTGCGAAATGTGCGGCAAATATTTCTCGTCGAAATACACGCATCAGTCGCACATGAAGACGCACATGGAGCGTCCGAGACCCTACACTTGCAGCAAATGCGGCAAATCGTTCTTCACTCTGCAGAACCTCAACCAGCACGAAAAGACTCATTTGGGCATCAAAGACTTTGTCTGCAAAATCTGCAACAAGGCTTTCGGCACGATGCACAATTTGGAAGTGCACGGAGTCGTGCACACGGGCGTGAAGCCCTTCAAGTGCAAGACGTGCGGAAAAGGCTTCGCACGGCGTGCGGAGATTCGCGATCACGACAGAACGCATACGGGCGAGCGTCCGTACGTGTGCGATATTTGCGGAACGAGCTTTTCGCAGCGCAGCAATCTGCAATCGCACAAAAGGGCGACGCATTTCGACGATAAGCGATATAAGTGCAGGCAGTGCGAGAAGTGTTTCAAGAGACGACGGTTGTTGGAGTATCACATTAAGGCTTCGCATACGGGAGAGCGGCCGTTCCGATGTCAAGTGTGCGATGCCACCTTCGTTTATCCTGAACATTTCAAAAAGCACCAAAGAATACACAGCGGTGAAAAGCCGTATAAATGCGAGGTATGCCAAAAAGCCTTCAACTCTCGCGATAACAGAAACGCCCATAGATTCGTACATTCTGATAAAAAACCATACGAATGTTTGGTATGCGGCGCCGGATTCATGCGAAAGCCTATGCTTTACGCCCATATGCACACACAAGGTCACTTGAGAGACACTATAGTCGTGAACCAACCTCGGCTCAACTGTGAAGGCGATTCGGGCGAGAATAGAAACAcgtttataatagaaaatggtCAAGAGGAGGTTATTCCTAAAttcaagGAAGAAAATACTGATAACGACATGGTCGAAATACCCATAATGGTGCAGACTGGCGATCAATCGCAAGACGGATCAATCATCGCTAAAACTGAAGAAATAATGCCAAATGAAGAAACGTATTTAGAAAGCACCGAAGACGTAATGGACGAAGATATGCTCGATCCTCAAAGAATAGAAATAATAGACGACGAAACGACTCATGAAGTTAGCgagTTCATTCAGTCCGAAGACGGAACTCTTCGATTGGTGCAGATAAGGTTAGCAGACGGCGAAAACGCTTGGGTCGCTTTGAACGAATAA
Protein Sequence
MDPKTNPHCYVCNSRVGVSIRNAVEIFNSQNKFPTTDRSLISCMNGVLNQEIDKQNTHSFVICKKCYKLFQEYDELEFRMIEIKDEMNMEFKRTLQKHDMNMDSSSDLVSDNVYSKEGVKIKEEINTTDDSNSMEWSKTPTFTDIKKISPAPSNLIIVGHKGKKITIQKPAIKAGQQKNNFDISSIKQENKSIHLSDDSVDLQLQQLHQESLEAEKAEQPPTKMDNQNNDDVQEKKSKKNKSSDSKKVIEYLSEVDGIIVKTEGEDRGDDDKYVISELEIVENSNSDMQLEEGTILNTSDGGIIKVLQHDGKNIIQDEEGNFYRANEDGNLEMILPEDDDYDGDLDDDVVQYETINLKEGVSILKFNPSILNKNIFKNKKSNGLDEEEDVNDDENMERIIYYSCLACGSADMEKKNQEGGENDEADACKDEDEKIFLGDANMIMEHMKTVHSMKIYICEICGYVKTTKASLLDHLSDHLSSKNGDFKCETCSKSFETRIALKKHQKFQHWKTKNFPCTICNKKFSSKNLLEEHTNIHKGLKPYSCEMCGKYFSSKYTHQSHMKTHMERPRPYTCSKCGKSFFTLQNLNQHEKTHLGIKDFVCKICNKAFGTMHNLEVHGVVHTGVKPFKCKTCGKGFARRAEIRDHDRTHTGERPYVCDICGTSFSQRSNLQSHKRATHFDDKRYKCRQCEKCFKRRRLLEYHIKASHTGERPFRCQVCDATFVYPEHFKKHQRIHSGEKPYKCEVCQKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPMLYAHMHTQGHLRDTIVVNQPRLNCEGDSGENRNTFIIENGQEEVIPKFKEENTDNDMVEIPIMVQTGDQSQDGSIIAKTEEIMPNEETYLESTEDVMDEDMLDPQRIEIIDDETTHEVSEFIQSEDGTLRLVQIRLADGENAWVALNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00815278;
90% Identity
-
80% Identity
-