Hbet005472.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hydropsyche betteni
Gene Symbol
-
Assembly
GCA_028571205.2
Location
JAOXNN020000029.1:3203407-3209096[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.11 1.5e+02 7.1 0.1 1 23 380 402 380 402 0.95
2 12 0.00015 0.19 16.1 2.6 1 23 410 433 410 433 0.96
3 12 1.6e-05 0.021 19.1 0.9 1 23 439 461 439 461 0.96
4 12 0.00028 0.38 15.2 5.1 1 23 467 489 467 489 0.99
5 12 1.7e-06 0.0022 22.2 2.7 1 23 496 518 496 518 0.99
6 12 9.5e-05 0.13 16.7 0.3 1 23 524 546 524 546 0.93
7 12 6.4e-06 0.0085 20.4 0.6 1 23 552 574 552 574 0.99
8 12 9.1e-08 0.00012 26.2 0.6 1 23 580 603 580 603 0.96
9 12 0.00013 0.17 16.3 4.9 1 23 609 632 609 632 0.96
10 12 4.6e-06 0.0061 20.8 2.2 1 23 638 660 638 660 0.98
11 12 5.6e-05 0.075 17.4 1.1 1 23 666 688 666 688 0.97
12 12 0.0015 2.1 12.9 0.2 1 23 694 718 694 718 0.93

Sequence Information

Coding Sequence
ATGGATCCGAAAACAAATCCACATTGTTACGTGTGCAACAGTCGAGTGGGAGTTTCGATTAGAAACGCCGTCGAAATATTCAACTCTCAAAACAACTTTCCGACCACGGACAGATCGCTTATCTCTTGTATGAACGGCGTTCTCAACCAAGACATAGATAAGCAAAACACGCATTCGTTCATTATATGCAAAAAGTGTTATAAACTGTTTCAAGAATACGACGAATTGGAATTTAGGATGATCGAAATCAAAGATGAAATGAATAAGGAGTTTAAAAGGACTTTACAAAAACACGATATGAACATGGATTCTAATTCCGATCTGGTTTTGGATAACGCGTACGCGAAAGAAGGAttatctGAAGACTCTGTCGATCTTCAATTGCAACAATTGCACCAGGAAAGTTCGGAAACCGAAAAAGTGGAACAACCTCCTTCTAAAATCGATAACAAGAACAACGATGAtgtccaagaaaaaaaaagtaaaaagagcAAAAGCTCAGATAGCAAAAAAGTTATCGAATACTTGAGCGAAGTGGACGGAATTATCGTAAAAACGGAGGGCGAAGACAGAGGAGACGacgataaatatgtaattagcGAATTAGAAATTGTCGAAAATAGCAATTCAGACATGCAACTAGAAGAGGGCACAATTTTGAATACGAGCGATGGTggtattataaaagttttacagCACGAagggaaaaatataatacaagacgAAGAAGGAAATTTCTATAGAGCCAACGAAGACGGCAACCTTGAAATGATATTACCGGATGATGATGATTACGACGGGGACTTAGACGAAGACGTCGTTCAATACGAAACCATCAACTTGAAAGaggGAGTaagcattttgaaatttaatccatcgattttaaataagagtatattcaaaaataaaaagtctaATGGTATGGACGAAGAAGAAGATATCAACGACGAAGAAAATATGggaagaataatttattattcatgtcTGGCTTGTGGTTCGGCAgatatggaaaagaaaaatcagGAAGGCGGTGAAAACGATGAAGCAGATGCATGTAAAGATGAGgaggagaaaatatttttaggcgACGCCAATATGATCATGGAACATATGAAAACCGTAcatagtatgaaaatatatatttgcgaaatatgCGGATATGTGAAGACAACTAAAGCTAGCATTCTTGAACATTTGTccAATCATTTGGCGTTAAAAACCGGTGATTTCAAATGCGAGACGTGTTCTAAATCGTTTGATACACTACTCGCGTTgaagaaacatcaaaaatttcagcattGGAAGACAAAAAACTTTCCGTGCAcgatgtgcaataaaaaattctcTTCGAAAAACCTCTTAGAAGAGCACACCAACGGACACAAAGGTCTGAAACCGTACAGTTGCGAAATGTGCGGCAAGTACTTCTCGTCGAAATACACGCATCAGTCGCACATGAAGACGCACATGGAGCGTCCGAGACCCTACACATGCAGCAAATGCGGCAAATCGTTCTTCACCCTGCAGAACCTCAACCAGCACGAAAAGACCCACTTGGGCATCAAAGACTTTGTCTGCAAGATCTGCAACAAGGCCTTCGGCACGATGCACAATTTGGAAGTGCACGGAGTCGTGCACACCGGCGTGAAGCCTTTCAAGTGCAAGACTTGCGGCAAAGGCTTCGCTCGGCGCGCCGAAATTCGCGACCACGAAAGAACGCACACCGGCGAACGTCCGTACGTGTGCGACATTTGCGGAACGAGCTTTTCGCAACGCAGCAATCTGCAGTCGCACAAGAGGGCCACGCATTTCGATGATAAACGCTATAAATGCAGGCAGTGCGAAAAGTGTTTCAAGAGACGTCGgtTATTAGAGTATCATATTAAGGCTTCGCATACGGGAGAGCGGCCGTTCCGATGTCAAGTCTGCGACGCCACCTTCGTTTATcctgaacattttaaaaaacaccaAAGAATACACAGCGGCGAAAAGCCGTATAAATGCGagGTATGCCAAAAAGCTTTCAACTCTCGCGATAACAGAAACGCCCATAGATTCGTACATTCTGATAAGAAACCGTACGAATGTTTGGTATGTGGCGCCGGATTTATGCGAAAGCCAATGCTTTATGCTCATATGCACACACAAGGTCACTTGAGAGACACTATAGTCGTGAATCAGCCTCGGCTCAATTGCGAAGGCGATTCCGGCGAAAATAGAAacacttttataatagaaaatggtCAAGAGGAAGTCATTCCTAAAttcaagGAGGAAAATACCGAAAACGACATAGTCGAAATACCCGTATTAGTACAAACTGGCGATCAATCACAAGACGGATCAATTATCGCTAAAACTGAAGAAATAATGCCGAATGAAGAAACGTATTTAGAAAGCACCGAAGACGTAATGGATGAAGATATGCTCGATCCTCAAAGAATAGAAATAATAGACGACGAAACGACCCATGAAGTTAGCgagttcATTCAGACGGAAGACGGAACTCTTCGGTTGGTGCAGATAAGGTTATCTGATGGCGAAAACGCTTGGGTCGCTTTGAACGATTAA
Protein Sequence
MDPKTNPHCYVCNSRVGVSIRNAVEIFNSQNNFPTTDRSLISCMNGVLNQDIDKQNTHSFIICKKCYKLFQEYDELEFRMIEIKDEMNKEFKRTLQKHDMNMDSNSDLVLDNAYAKEGLSEDSVDLQLQQLHQESSETEKVEQPPSKIDNKNNDDVQEKKSKKSKSSDSKKVIEYLSEVDGIIVKTEGEDRGDDDKYVISELEIVENSNSDMQLEEGTILNTSDGGIIKVLQHEGKNIIQDEEGNFYRANEDGNLEMILPDDDDYDGDLDEDVVQYETINLKEGVSILKFNPSILNKSIFKNKKSNGMDEEEDINDEENMGRIIYYSCLACGSADMEKKNQEGGENDEADACKDEEEKIFLGDANMIMEHMKTVHSMKIYICEICGYVKTTKASILEHLSNHLALKTGDFKCETCSKSFDTLLALKKHQKFQHWKTKNFPCTMCNKKFSSKNLLEEHTNGHKGLKPYSCEMCGKYFSSKYTHQSHMKTHMERPRPYTCSKCGKSFFTLQNLNQHEKTHLGIKDFVCKICNKAFGTMHNLEVHGVVHTGVKPFKCKTCGKGFARRAEIRDHERTHTGERPYVCDICGTSFSQRSNLQSHKRATHFDDKRYKCRQCEKCFKRRRLLEYHIKASHTGERPFRCQVCDATFVYPEHFKKHQRIHSGEKPYKCEVCQKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPMLYAHMHTQGHLRDTIVVNQPRLNCEGDSGENRNTFIIENGQEEVIPKFKEENTENDIVEIPVLVQTGDQSQDGSIIAKTEEIMPNEETYLESTEDVMDEDMLDPQRIEIIDDETTHEVSEFIQTEDGTLRLVQIRLSDGENAWVALND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00815975;
90% Identity
-
80% Identity
-