Hten007073.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- egg
- Assembly
- GCA_009617725.1
- Location
- VTON01000064.1:2078861-2083197[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.63 2.8e+03 -2.0 0.0 17 36 501 520 497 523 0.87 2 3 0.23 1e+03 -0.6 0.0 25 38 579 591 555 592 0.78 3 3 1.4e-12 6.4e-09 35.3 0.1 6 75 625 687 621 689 0.89
Sequence Information
- Coding Sequence
- ATGGAAATCTTAAATTTAGATAGTGATGATGAAGAAATGTCGAAACGGAACAGCGTTGTTGAAGAAAAAATGGAAGTCGTATCGGAAGAAAAAAgcgatcaaacaaaaataagcGAAAGGTCAAAATCTTATAACActtgtgtaaatttaaaatgtgaaagTAGATCTAACGTCTCGATGATACCTTGTCCTATTTTCATGCTCGGaatgtataatgtgaaaaGAACTAGAAAAATGGTACATCCAAAAATTTGTCAATCATGCTTCGATTTTGCTGTCAATGAAACTgagttactCGTgtctaaatttcaaaatggaaaacctttgattaacataaaattacaaaacaacgATGAGAGTGTTGAGGTTTTGGATTCTGATTCCGACGATGAGGagaaaaatgatgaattcaTTGCTTTGCCAGGTTATGATTCTCTCACAGCCAATGAACTGGAGTTCGTAACCGAAAAGTTTCCTGATATGATGGAAGAAGTATCTCggaaatataaattcgatgaacaaattcaaatgtgcaatgaattaataaataatcaggCAGTGCAATTAGAAAAAGATACGTCAGATTTATATGTGCAATACaatgcattagaaaaaaacttGAACTATATTAGAAATACTTTATATAGTACAGTTAGAATTACTCGGCAACACGAAGCAGAATTATTAATCCCCGTAGAATTTGAAGAACCAGAGGAATTAagtgattatgaaaaaaataatatggacGTAGAAATAGATCCCACACTCGTCCCTCCAGTGGGAGTTAATAAATATGAGCCGTTAAAGGTCGATGAGAAAGTTTATACTGTGAAACATTCGATATTTGGAGCATGGATACCTgctattataattgaaattaatcccGTTGGAACacctATGGCGAATGGTATGCCACTTCTATTTTCACTTTTGactgtcaaattttatataggtGGTAGAAAAACTCTAAAACAAGTAACAGGACGTCAAGTTGCATATCTTCATCCTGGCGAATTTCTTTATTCGATAGGTACTAGAGTTATAGCATTATTTAAAGATAATGTCACTGCTTCATTTAAAAAGGATTCTTTTTATTCTGGCGTTATTGCTGAAACACCATCTCTATTTAACAGATATAGatatttagtatttttcgATGATGGTTACTCTCAGTATGTATATCATAAGAATATATTGCCCGTGAGCGAAAAGTCTGATAAAGTATGGGAAGACGTTCATCCTGATTCTCGAGATTtcgtaagaaaatatttaactagtTATCCAGAACGGCCGATGGTGCGGCTGGAAATCGGACACATTTTGAAAGCAGAACATAAtgGTGGCTGGTGGAATGCAGTTGTTAGGGATCTGGATGCATCCTTGGCCCTTTTGCAGTTCGAAAGTAGCAATAAGATTGAATGGATATATCGCGGCAGTACGAGGTTATTGTTGCTGTATCAGCAGTTGCAGGCTGTCGATCGGCGTGCACATGGTTCTGGACGCCACAGGATTTTGAGGACTACAAACCATTCTTTGCGCAAaatGAACGTGCCTTATGTCGAATATACGAGAACTGTAGAAGATAGTTTAACACCATTAGAAGTTGAAAATGAAGAGAATGATGTACCTGAAAATGATAAAAGTACGAAACCTTTACGTGCCGTAGCCAAAAAAAGTACTGCTGCCCCTGCTGCCCCGAAAGATAAAGATTTTACTCCAGAAGTAATGGACACTGGCAACTTAGTCAGAAGTAGAGTTGTTTACTATTCACCGAAAATATGGATACATCCCAAAAAAATGGTTCCCCACGAATGTGGTCCGTATTGTCTTAATCGGAAAACACCTCCTTTATCAGGACTCCGGTCGTATCATCCACTAGCCAAACCATTATTATCAGCTTGGGAAAGATTATTAGTCAAATATAGATACAAGCGAGGAGTAATGTACCGTGCGCCTTGTGGAAGAAGACTACGTAACATTCAAGAAGTACATAAATACTTACGTATGACTAAATCAGATATGAGCGTTGaccttttcgattttgattacCGCGTGCATTGCTTAGCCGAGTTTGTTCCTACTAGCTGCTTTGTCAAAAAAGCTGATATATCTCACGGAGTAGAAGCAATGGCAGTTCCATGTGTGAACTATTACGATCATTCATTGCCAGATTTTTGGACATATAGTACTAGTCGTCGAGCGACTGAAGGAGTAGATCTCAATTTAGACGAAAATTTCTTATGCGGTTGCGATTGTACTGATGATTGCCAAGACAAGGAAAAATGTCAATGCTGGAAGTTGACTTATGAAGGTACTAGATTTATCGGAATGAGAGATGAAAATGTTGGTTATGAATATAGAAGACTGTACGAACAAGTACCGACTGGTATTTATGAGTGTAATAGcaggtGTAAATGTGCTTCTACTTGTCTCAATAGAGTCGTACAGCATCCGTTGCAATTGAAATTGCAGgttttcaaAACTTACAATAAGGGATGGGGAATACGAGCTTTAAATGATATACCTAGAGGTTGTTTCATATGTGTATATGCTGGAAATTTATTAACAGATGCTGCCGCTAATGatggtggtaaaaaaaatgaaggtgATAAATATTTGGCTGACTTAGATTACATAGAAGttgtagaaaaattaaaggaaagttttgaatttgacaTTCCTGAAGCAGATAAGATCTTAGATAAAGCAAATGtaacaaattga
- Protein Sequence
- MEILNLDSDDEEMSKRNSVVEEKMEVVSEEKSDQTKISERSKSYNTCVNLKCESRSNVSMIPCPIFMLGMYNVKRTRKMVHPKICQSCFDFAVNETELLVSKFQNGKPLINIKLQNNDESVEVLDSDSDDEEKNDEFIALPGYDSLTANELEFVTEKFPDMMEEVSRKYKFDEQIQMCNELINNQAVQLEKDTSDLYVQYNALEKNLNYIRNTLYSTVRITRQHEAELLIPVEFEEPEELSDYEKNNMDVEIDPTLVPPVGVNKYEPLKVDEKVYTVKHSIFGAWIPAIIIEINPVGTPMANGMPLLFSLLTVKFYIGGRKTLKQVTGRQVAYLHPGEFLYSIGTRVIALFKDNVTASFKKDSFYSGVIAETPSLFNRYRYLVFFDDGYSQYVYHKNILPVSEKSDKVWEDVHPDSRDFVRKYLTSYPERPMVRLEIGHILKAEHNGGWWNAVVRDLDASLALLQFESSNKIEWIYRGSTRLLLLYQQLQAVDRRAHGSGRHRILRTTNHSLRKMNVPYVEYTRTVEDSLTPLEVENEENDVPENDKSTKPLRAVAKKSTAAPAAPKDKDFTPEVMDTGNLVRSRVVYYSPKIWIHPKKMVPHECGPYCLNRKTPPLSGLRSYHPLAKPLLSAWERLLVKYRYKRGVMYRAPCGRRLRNIQEVHKYLRMTKSDMSVDLFDFDYRVHCLAEFVPTSCFVKKADISHGVEAMAVPCVNYYDHSLPDFWTYSTSRRATEGVDLNLDENFLCGCDCTDDCQDKEKCQCWKLTYEGTRFIGMRDENVGYEYRRLYEQVPTGIYECNSRCKCASTCLNRVVQHPLQLKLQVFKTYNKGWGIRALNDIPRGCFICVYAGNLLTDAAANDGGKKNEGDKYLADLDYIEVVEKLKESFEFDIPEADKILDKANVTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -