Hten008112.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000004.1:3120453-3121016[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-09 2.2e-06 27.3 0.0 2 37 19 54 18 65 0.87
Sequence Information
- Coding Sequence
- ATGCCTAGTGATACAAATGATAGTCAGAGGAGGCAAAAGAAGGGTACCTGGGATCCTGCAGACATGCATAAAGTCGTGGAAAAGGTACTGATCAAAGAGATGAGTGCACGTCAAGCCGCAGAGCGCTATCAAGTACCACGAACTACATTGAATGATAGAGTTagtgctattaaaaaaaataaagaaatgtcCATTGAGCCAATTGTGGGTCGTTtctttaatactttttcatcTGAACATGAAGAAATATTGGCAGAATATGTTAAAGACCTGGCCAACCGGTTAATGCCTTTAAACAGGAAAGAATTTTTATGTCTCGCTTTTCAACTAGCCGAGAAATTAAAGTTACCTCACCAGTTCAATCAAGAGAAGAAATCTGCAGGAAAACACTACACTAAAAGCAATGTCGAATCATTCAAGCGAGAGAAAAATGTCCTTGTAGGAAAAGATTTTAACAAGAAAAGTAAGGTTTCAAGAAAAGATGTTACTAAAAAAAGTAAGAACTTGCTTTCAGATGTTAGTaagaaaacaaagaaaaataaaaacgaaaacctaCCTCCTTAG
- Protein Sequence
- MPSDTNDSQRRQKKGTWDPADMHKVVEKVLIKEMSARQAAERYQVPRTTLNDRVSAIKKNKEMSIEPIVGRFFNTFSSEHEEILAEYVKDLANRLMPLNRKEFLCLAFQLAEKLKLPHQFNQEKKSAGKHYTKSNVESFKREKNVLVGKDFNKKSKVSRKDVTKKSKNLLSDVSKKTKKNKNENLPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815730;
- 90% Identity
- iTF_00815741;
- 80% Identity
- -