Hbet011195.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000067.1:459318-461109[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00087 2.7e+02 5.7 0.0 22 53 6 38 3 39 0.81 2 7 0.038 1.1e+04 0.5 0.1 21 31 101 111 79 134 0.80 3 7 0.13 4.1e+04 -1.3 0.0 20 44 248 272 240 276 0.81 4 7 7.9e-05 24 9.1 0.0 26 45 294 313 281 319 0.77 5 7 0.23 7.1e+04 -2.0 0.0 27 44 323 340 321 344 0.85 6 7 2.4e-07 0.074 17.1 0.2 22 51 373 402 369 405 0.94 7 7 0.00041 1.3e+02 6.8 0.2 25 48 437 460 431 463 0.88
Sequence Information
- Coding Sequence
- ATGTGGACGCATATGGAAAAACAACATCAATGTGATATTTGCAAGAAACTGTTTGTAGAAAAAAGTTCCCTGCGAAGGCATATAAGTACAATACATGCAGATTTTAAGCCTGGTTCTCGTGttgttcaaaacaatataaaacaacaatatagtTGTTTCAAGTGTGGAAAAGTCTTCAAATCACACGCTAAATTCAATATGCATCAAGAAATGCATGGAAATCCTAATTACGAATGTGAAATTTGTGGAAAAGTCTATGCTGGACGATCTCATTTGAAAATCCATCAAAGAATCCATACCGGTGAGAAGCCATACGTTTGCACTATTTGTAACATGAAATTTGCATTCAAACATGTTTTGAAATCGCACCAAGCTAGAATTCACCAAAAAGTCCATAAATTCAAGTGCAATCTTTGTTCTTtgactttcattaaaaaatcagacTTGTCTAGTCATGCTAGTTGTcatatgttgaatttgaagaaaaataagcGTCATTATGTTTCACGtaagaattcaaaaaagttcatcCCAGTGATAAAGAAGTCACATAttacaaaaagtaataaaaaaaacaatgatgataCTAGTTCTGGTCCTATTCAAGGTCTCTTCGGACAGCTCATAGATTTGATTCCAGAAAGAAACAAATCTGAGGATGACAATGCTGAAGACGTCGATAAAAGTGATTCCATTGACAGCAAGGATGGAATATGTAAGTCTCCCAAATCACTTATAgatcaaggaaaaaaaaataaggAATGTATGAATTGTTTCAAAGCATTTGAGAGAATGGGTGATTTGAAACGTCACATCATATCACATATAGTAGAAGACATAACTAATAAAGCAAAAGAACAAAACACAGTACCCGTCtacaaatgtgaaatttgttgtGCCGTCTTCAAACAAGtggacaaattcaaaaaacatctGCGTGAACATGCTCACTTAACACTTTACCAATGCGAAATATGTGATAGAGCCTTCGGAGACTCCAGTAATTTTTCGAAGCACAAAAAAGTACATGgagtttcatttttgaaatgcaCAATCTGCAGTAGGAAATTCAACACTAAGAGAATGATGGTGATGCATATGGAGTATCATAGACACAATCAACCGAAAACGTGTAATTATTGTaagaaattgtttcattttgactCTAATCTGCGGAAACATATTAAAATCGCACATTTAGCCAAAGGTAAGATGACTTATCGATGCGAAGAATGTGGGGAAAGATTCAATAGTGTGAAACTGAAGTGGGAACATCAGTGGGATATTCATCAGATGCGGAAGGTAGACGCTGATTGTCATATTTGCAACGCTCAGTTTAGAAAGGTTTCCCTTTTGAGAGCCCACCTCATAAAAGAGCATGCAACtcttaaaagtttaaattaa
- Protein Sequence
- MWTHMEKQHQCDICKKLFVEKSSLRRHISTIHADFKPGSRVVQNNIKQQYSCFKCGKVFKSHAKFNMHQEMHGNPNYECEICGKVYAGRSHLKIHQRIHTGEKPYVCTICNMKFAFKHVLKSHQARIHQKVHKFKCNLCSLTFIKKSDLSSHASCHMLNLKKNKRHYVSRKNSKKFIPVIKKSHITKSNKKNNDDTSSGPIQGLFGQLIDLIPERNKSEDDNAEDVDKSDSIDSKDGICKSPKSLIDQGKKNKECMNCFKAFERMGDLKRHIISHIVEDITNKAKEQNTVPVYKCEICCAVFKQVDKFKKHLREHAHLTLYQCEICDRAFGDSSNFSKHKKVHGVSFLKCTICSRKFNTKRMMVMHMEYHRHNQPKTCNYCKKLFHFDSNLRKHIKIAHLAKGKMTYRCEECGERFNSVKLKWEHQWDIHQMRKVDADCHICNAQFRKVSLLRAHLIKEHATLKSLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815980;
- 90% Identity
- iTF_00815980;
- 80% Identity
- iTF_00815281;