Hbet004509.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000025.1:502207-509662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00078 1 13.8 3.2 2 23 181 202 180 202 0.97 2 28 6.5 8.6e+03 1.5 0.4 1 20 246 265 246 267 0.90 3 28 0.0067 8.9 10.9 0.8 3 20 287 304 285 306 0.93 4 28 9.5e-05 0.13 16.7 0.3 2 23 359 380 358 380 0.94 5 28 0.00079 1 13.8 5.5 2 23 399 421 398 421 0.96 6 28 1e-05 0.014 19.7 1.4 2 23 439 461 438 461 0.97 7 28 0.72 9.6e+02 4.5 5.3 2 23 484 505 480 505 0.95 8 28 0.00023 0.31 15.5 1.3 1 23 516 538 516 538 0.98 9 28 0.046 61 8.2 1.3 2 23 593 614 592 614 0.97 10 28 9.2e-05 0.12 16.7 2.4 2 23 626 647 625 647 0.96 11 28 0.01 14 10.3 0.9 2 23 659 680 658 680 0.96 12 28 0.011 14 10.2 4.3 1 23 686 709 686 709 0.93 13 28 2.7 3.6e+03 2.7 3.4 1 20 722 741 722 744 0.94 14 28 0.015 20 9.7 3.8 1 23 755 777 755 778 0.96 15 28 0.00034 0.45 14.9 0.0 2 23 802 824 801 824 0.94 16 28 0.15 1.9e+02 6.7 0.6 3 23 845 865 843 865 0.88 17 28 2.6e-05 0.035 18.5 2.3 2 23 905 927 904 927 0.96 18 28 0.002 2.6 12.5 4.3 1 23 956 978 956 978 0.95 19 28 0.31 4.1e+02 5.6 0.3 2 21 982 1001 982 1002 0.94 20 28 0.77 1e+03 4.4 0.3 3 23 1059 1079 1058 1079 0.97 21 28 0.016 21 9.7 2.9 2 23 1086 1107 1085 1107 0.95 22 28 0.00047 0.62 14.5 1.1 2 23 1118 1140 1117 1140 0.96 23 28 2.7 3.5e+03 2.7 3.3 2 23 1156 1174 1155 1174 0.89 24 28 1 1.3e+03 4.0 3.2 1 19 1177 1195 1177 1198 0.91 25 28 8 1.1e+04 1.2 2.5 2 19 1230 1247 1227 1251 0.89 26 28 0.13 1.7e+02 6.8 2.0 1 23 1257 1279 1257 1279 0.91 27 28 0.00018 0.23 15.9 4.3 2 23 1290 1312 1289 1312 0.96 28 28 1.1 1.5e+03 3.9 3.9 2 23 1329 1347 1328 1347 0.94
Sequence Information
- Coding Sequence
- ATGGCGCTCCTGGCGCTCAGCAAATGTCGGCTGTGCCTCAAGCTCGGCGATTTTTACTCTATCTTCGCGGAGGACAATTCGGTGCAGCTGGCGCGCATGGCGATGGCTTGCTCCGATATACAGattcatGAAGGTGATGGCTTACCTGACAAAGTATGCGGAGAATGTGTTGAAAAACTTAGTTCTGcctatatatttaaacaacaatGTGAACGATCAGATACTGAACTTAGAAAATGCATGAACAATTCCGgatttaAAAGTACGCCTACCAGGAAAGTTGAAAGTCTCGAAAAACCATTAACAAGATCATCTAGAAATCCTCCTAGAAGCAAAAGAAAACATGATGAAGTTGTATCTTCGGAAATCAATCTTAACTTGACGGGTGGGCTATTAGAAGAAAGATACAGCGTCGACGTTCCTAATACTTTGTCTTTAGAAACCACTTATAATGCAAACAAAGGATTGAAGAATAAAAAGCGACGGCTTTCCGAATCGCcaaattcattttcttcttcCACTCCTCTCAAAGAGAAAATTTCCTgtaaatattgcgaaaaatctttcaataaatgTCAAAGCCTTTACGGCCACATGAAAATACACCGATACGAAAGCTTGTACGATAACGATAACGCCTCGGCGTCTCATTCCGTCGCTTCGGAGAACGACAATCTTTCGCAAGCCAGCGAAACGCCCAACAACTCCAACTCGCATTTGAGGGAAGGTGAAAAGTTCAATTGCGAAAATTGCGGCGACCAATATCACAATAGAGTACTTTTCAATGAACACGTCGAACAATGCAAAGACGGAAAATGTGACGAAAAGGCTGCTATGGCGTTATTGACAAAACTGTTTTGTCCGATTTGCAAGAGTAAATACAAACAGAAGACTTACCTTCGCAAACATTTAGGTAGAAGCGCTTGTGGTGTCGAATTGAAGAAGATTTTAGGCGACGACGATGTTTATTTACCAaAGAATGTATCTTTCAAAAAAGgcatgaaaagaaaatattcgatcGCCGACAAAATACCTGTAGAAAACACTACTAAACAGTCCGCCACTGGTTCACTTCAATGTAACAAATGCAACAAATCGTTCGATACTCAAATCCAATTGGTCATGCATTTGGCGGCTCATATGGCAAACATCGACGACGATTCAAAAGTTTCGAGTAAATTTAGGAAAACTTTGAAATGTGTTAAATGCAATAAGAAATTTAGgtATAAAGCATTTTTACGTAAGCATTTAAAAGTATGCCATAACAATTTGCCGTCAGATTTGTCTATTTTGGATGTACCTCTAAAAGCGAATCAATGCGATTTGTGCGGAAAGAGTTTCAAGTATGCTAAATCTCTCACTtggcataaaaatacaaaacatccgACGATAGACGATTCTCTCGTATCAACTCAAAAAAGAGgcattgaaatttccaaatgtCCCGCCAAATGTTTACATTGCGACTTAGTTTTCGAAAACGAACACACAACGAAAATGCATAATCGTATGCATATCGAAAATaatgtcaaagtgaaaaatgaatACAGTTGTCCcgaatgtgatataaaattcaCCAACACTAAATTCTTCCGGCTTCATATAAAAGAGCATAACGATCAAGCATGTTTCGATGATGATAACGACGCCGTTTACGACGCCAGTATATCGAATTATTGCGAAGTCACTAGCAATGTGGTCGAAGAAGAAAACGACGTCAAACCTTACATCGATATTTTAAGCGAGCAAAAACCAGTCGTCGAACTAAACGGCATAACATGTTctgtttgcgaaaaaaaattggaatctgTCAGAGGTTATCATTTGCATATGAGAACGCATTCAAAAGGGAATTCCAAAAAAAGCGTCGATTTATCTTGTTTTATATGCAGagagAGGTTTTCGCAgaaagaaaaattccaaaagcACATGAAAATCCATTACAACGACAACAATTTGGATCCGGCTCTTTTAAAATGTTCGATATGCAAAAAGCAATCGAAGAATATGAGATCTTACATCGCACACATGTCGTGGCATACGTTTAACGGACGATTCAAATGTCACTTGTGCACCGAAACATTCCCTTATTTGAAACTGTACAAGAATCATATggatttcaaacatcaaatcaacATCGACGAGCTCGAAGATCCCACACATTTCCAGTGTTATTTGTGCAAAAAGTATTACGATAGCGACATTTCGCTGCAGTATCACATACTCTGTCATCAAAAGGGCGATTCTTCGAAGGAGGAAAAATACGAATGCGCCCAATGCAACGAAGAATTCACCACGAAATACCAACATTTGATACACATGCAGTCGCATCATCAGGTTTTTCCCGCGAAAACCCTTCCGAGAAAAAAGTTTAACAAAATAGTGAAGAAAATGCCGAAAATCGTTTGTCCCGTTTGTGATATGGTGTTTGTGTCTCGCGTTAGATTGAACAGACACTTAAACGCTATGCATCCGgttaaaaaaatggtaaagaaGAACGATCCCGACGCCGAATCGATCAAAaagcatatttgtatattatgtacaaaagaATTCCCTACAAACGACAGGCTGCAATCTCATCTTGTTTTACATAAACGAAAACCAGATTTGTTTAAGTGTACGTTATGTTTCAAAAAGTCGCTTTCGCTCAAAACACATTTGTGCCACATAAAAGGGCATCTTCTCAAACAACATAAGGAAAAACCTATAAAATGTGATCATTGCGAAAAATCGTTTATACGCAGACAAGAATTGCGCCTGCATTTACGTCAAATGCACGATATTGTCGAaaattacgtgaaaaaaatagataaaggcGACGAATGGAAGCCCGGAGAGTTGGAAAAGAGCGAATTGCAAGAACACCAGTGTCACGTGTGTGGTAAAGTTCTCCGCAACGAGAGTACGTACCACAAACATTTAGTGTGGCACAACACTAGGCGTTGTAATTATTGTTTCGCATATTTCGATAAGAAAACATTCCTTTTAGCCCATATTATGTACAATTGTGATAAGAAAAAGTTGATCGGAAACTCCGATCAGTTCGATAAAAAGTTAAAGTGCCACATTTGCttgaaacaattttctattttagtcAAATTACATTGTCATTTGAAAGTACAACACAATTCGGATCCACTCCACAAACAATCTGTGTCCGAGTCTTCGGcgtgtgatttttgtttttccgttTTCAGTTCCGAAGAACGCATGTTGGCGCATCGTAAAGTCCATTTTCATACAGGGACGATGAAATGTACCGTTTGTTCCAAGTTGTTTAGACAGATGTCgtattttaaaaaccacaaagTACGCCATTACAAAGAATCGTACGAACACAATCCTTTGAAATGCCCGCATTGCGACGAAAAATTCGTATCGATGCGCTTATACGTGAAGCATCTCCGATTAGTCCACAAAACGCCCATGGTTTGGCTCGTCCCCGAATCGATACCGTCGAAAAAATGCTCGATATGCAATAAAGACTTCATGCACATCGAAAGACACATGATGTATCACGACAAGtacaaatgcaaaaaatgcaatcaatattttatgtccGAAATATTATTCACGGAACACTTTTGCGAATTcgaaagcgaaaacgaaaacgacaatAACTCCAAACTTAATAATAACGGTTCTTTAGAAAATACTTTATCTATCGATAATCAATGTTATGAAGAATGCGATTATTGCTTCAAACCGATTTCGACatcttatacaaaaacaaaacacgattCTAATCATAGTaaaatggtgtattttttttgtcgtttgtgCGATAGGAAGTTCTTCATGAAGTCGGCTTTCAACATTCACAGTACGGCACATCGTTTacaacatttcaaaaagaaCCCGCTACGATGCAGGCACTGCGGGGAATCGTTCACTCGTTATCAACATTACACCGATCACATACGACAAGTACACAACGATCCAGAAACTATGGAGTTCCATTTAAAACCTAGTCCGCCGAAAAAATGCCTGATCTGTAAAAAACCCTTTGTCAATCTCCACCGACATTACAGATATCATCTCGAATTAAGATGTAGGAACTGCTTAAAATACATACTGTctcaaaaattgtttaatattcataaatgcgACGACGTCGATAATCCCGATATGGCTGTATCGTTCGACGGTGACATCACGTCTTTGAAGGAACCGGATTTCAACGAATGGGAGAGCGAGAGAATGGTCGAAGCGATACCCAGAAACGAAGATTTCATGATGCCTAACGATTTAATCGGATCCGATAGAAATAATTCGACGATGCCCAACACTCGTCGTATGAACAATACATTGGAGAATATCCACATGCGAGATCCTAACACTTCGTTGGCTAATTCTGTTTCCCACAATTACCTGACGAACGCGAATTCTTTGAATCAGCACAACTTCGAGAACTTTTCGCCTATCATTTCGTCGACGGTGTCGTTGAGTTCGTCGGCAGTCGAAAAGGATAAAGACGATACTATAGATCTAGTGAATATTCAAGTCAAGAGTGAACCTATCGATCAGTATTACAAGGATTgtcaattcgattttcaaaattcgttgATGGATATAAACAGGTCGGGTTGA
- Protein Sequence
- MALLALSKCRLCLKLGDFYSIFAEDNSVQLARMAMACSDIQIHEGDGLPDKVCGECVEKLSSAYIFKQQCERSDTELRKCMNNSGFKSTPTRKVESLEKPLTRSSRNPPRSKRKHDEVVSSEINLNLTGGLLEERYSVDVPNTLSLETTYNANKGLKNKKRRLSESPNSFSSSTPLKEKISCKYCEKSFNKCQSLYGHMKIHRYESLYDNDNASASHSVASENDNLSQASETPNNSNSHLREGEKFNCENCGDQYHNRVLFNEHVEQCKDGKCDEKAAMALLTKLFCPICKSKYKQKTYLRKHLGRSACGVELKKILGDDDVYLPKNVSFKKGMKRKYSIADKIPVENTTKQSATGSLQCNKCNKSFDTQIQLVMHLAAHMANIDDDSKVSSKFRKTLKCVKCNKKFRYKAFLRKHLKVCHNNLPSDLSILDVPLKANQCDLCGKSFKYAKSLTWHKNTKHPTIDDSLVSTQKRGIEISKCPAKCLHCDLVFENEHTTKMHNRMHIENNVKVKNEYSCPECDIKFTNTKFFRLHIKEHNDQACFDDDNDAVYDASISNYCEVTSNVVEEENDVKPYIDILSEQKPVVELNGITCSVCEKKLESVRGYHLHMRTHSKGNSKKSVDLSCFICRERFSQKEKFQKHMKIHYNDNNLDPALLKCSICKKQSKNMRSYIAHMSWHTFNGRFKCHLCTETFPYLKLYKNHMDFKHQINIDELEDPTHFQCYLCKKYYDSDISLQYHILCHQKGDSSKEEKYECAQCNEEFTTKYQHLIHMQSHHQVFPAKTLPRKKFNKIVKKMPKIVCPVCDMVFVSRVRLNRHLNAMHPVKKMVKKNDPDAESIKKHICILCTKEFPTNDRLQSHLVLHKRKPDLFKCTLCFKKSLSLKTHLCHIKGHLLKQHKEKPIKCDHCEKSFIRRQELRLHLRQMHDIVENYVKKIDKGDEWKPGELEKSELQEHQCHVCGKVLRNESTYHKHLVWHNTRRCNYCFAYFDKKTFLLAHIMYNCDKKKLIGNSDQFDKKLKCHICLKQFSILVKLHCHLKVQHNSDPLHKQSVSESSACDFCFSVFSSEERMLAHRKVHFHTGTMKCTVCSKLFRQMSYFKNHKVRHYKESYEHNPLKCPHCDEKFVSMRLYVKHLRLVHKTPMVWLVPESIPSKKCSICNKDFMHIERHMMYHDKYKCKKCNQYFMSEILFTEHFCEFESENENDNNSKLNNNGSLENTLSIDNQCYEECDYCFKPISTSYTKTKHDSNHSKMVYFFCRLCDRKFFMKSAFNIHSTAHRLQHFKKNPLRCRHCGESFTRYQHYTDHIRQVHNDPETMEFHLKPSPPKKCLICKKPFVNLHRHYRYHLELRCRNCLKYILSQKLFNIHKCDDVDNPDMAVSFDGDITSLKEPDFNEWESERMVEAIPRNEDFMMPNDLIGSDRNNSTMPNTRRMNNTLENIHMRDPNTSLANSVSHNYLTNANSLNQHNFENFSPIISSTVSLSSSAVEKDKDDTIDLVNIQVKSEPIDQYYKDCQFDFQNSLMDINRSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815989;
- 90% Identity
- iTF_00815989;
- 80% Identity
- -