Basic Information

Gene Symbol
Trerf1
Assembly
GCA_013841185.1
Location
JACDRP010000351.1:10892-20029[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-12 1.6e-09 37.2 0.2 2 46 1097 1141 1096 1141 0.96

Sequence Information

Coding Sequence
ATGGCATCTGGTCGGACAACAACAGTTTGCGCTAAAGTATTCGGTAATGCTTCAGCATTGGCCAAACACAAACTAACACACAGCGATGAACGAAAATATGTTTGTACAATGTGCGGTAAAGCATTCAAACGACAAGACCATCTTAACGGTCATATGTTGACACATCGTAATAAAAAACCGTACGAATGTAAAGCTGAGGGTTGTGGGAAGAGTTATTGTGATGCCAGATCATTACGGCGACATACAGAAAATCATCATAGTTCAACAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCACCAGCACAGGGGGCGGCTGCAGGTGATGCAGCATCACCGCACGGTTCTAGTTGTATTCAATATGCACCACCACCAACGGCCTCATCTACAACAACCAATACGACTGGCAAAAGTCAACTACAACAGCTTCTAGCTACCGAACCGGCAAAGGGCGATAATGGCGGCAATAATGACGGCCTTACTAAACAACAATTGGATTTAATCCATCATATAATGGAGCAAACTCAACGACAATCTCAATCGGTTAATAAAACAACAACAAAACCGATTACGAAGCCGGCCAACAAAACACCTGTGAAAGTTCAAAGAATATGGACGTCAACGACGCAACAGACTTCATCAAACAAAACAAGTGGAAGCGCTACGAGTCCGCAGGCGAAAGTTACAACAACCACCCCATCAACATCCCCGGCTGCTACCTCATCATCCACTGGCGCTGCCGCCGCCACCACCGCCACTACCACCAATATAACGAATAACAAAGCCGAACCGAAACCGGTTGAATGCAATTTATGTCATAGAAAATTTAAAAATATCCCAGCCTTAAACGGCCATATGAGGCTGCATGGGGGCTATTTTAAAAAGGATTCGGAAAATAAAAAGTGTGAGAAAAAGGATGTCAACGGGCCACCTTTACAAACAGCTTCAGTGAGTGTTCGGGCTTTGATTGAAGAGAAAATCATCAATAAGCGGATTACAAATCCACAGCCAACGAATAACGTCGGCGATACGGACAATACGAAACCAACAGCGCCACCATTGTTTCCATTAACTGTGCATTCCTCAGTAAATTCAAATGATTTGGACACGAAAATTACGTCTTTTGTTGTACCAGCAGCACCACCACCACCGTCACAACAAACAACAGAAAAAGCCAGAAGACATTCCGATGCAGAAGCTTTCAATAATACATCTCGATCAGTTACTGTAACAACAACAACAGCCACAAATCAAACTAGTACTCAACAAAAAGCTGAAGCTCTAGCTGATCTTATATTGAAACGAGATAAAATGACTGTCAAACGTACTACCTCTGATCCTGGACAATCTACATCGCAAATCATTCAATTCCAATCGAATGATTCGTTCACATTAACTGGTGTTACTTACCAATCCGAAGATGGGGGATATCTATCGCCAAGTCTACAGGATGAGGTTTTTACACAAGTACAAGATACAATGCTGTTGCAAGGAGTTGATCCCCATCAACTAGCCTCAATTCAATTCCAAACTGATAATCTACTACAAGATCAAAACGAACAACAACAATTGCAAGATATCAGTTTAGAAGATTACACAAATTTACAAGAAGCTGTTGTACAATCAAACCATTCGGTTAATCAAGAACTACAAGCAGTTCTTGATTCACCACTACCTGAAAGTCTAGCCGAATTCAGTACGTTCCATTCAACAACAAATCTAGATATGCCATCACCATCCTATCAAACTCAATCACCAGCTCAATATACAGAATCACCGCACACTTCCCTAACAGCTCAATCACCACTACAAAGTCCGTTAATACGGCACGATTCACCCGGTTTCGCCTATCCTACACCTCCTGCTAGCCATGAAGGCCAAAGTCCCTGTTTTGGCCAAAATTCGCTTCTACCAATGGTATCGCCGAAACAGGAATTCGGCCAAGTCATCGAACGGGGTGTTGATGAACCACCACAAGCTTCTTCACCATTATCGGCAGCTTTCTTCACATCAACCATGTCGAGTTCGGCTGCTGTTGAAGAAGCCTTAGAAGAAGTCCTACCAGGCGAAAGTATCCCAAATGATATTTATCCATTAACAAATTCACCAACACCACAATCTCCCTTATCAGTTGGTCTAACTCCAGTCCCGTCTCCTTTATCAAATATTGTAAGTACATCAGTACCATCACCACATCCATCAACAACATTCACTTCATCAGCGAATAACGTGTCGTTTCCATTATCACCACATTATACATTACAATCGCAAATGATGCCAAATTCAGATGATCCGTTATTGTCGAGCAGTCCTAAAGATTTTGTAACAAGAAAGAAATTCGAATTCAATGGTGTACCGTTGAAAGTAATCAGCAATAATGGTATATTAGATTTGAACAGTGCAAATTTTGCCGGCATTCTTGTCGATACAAATGGCGAAATTAAATTTATCCAAACCGGCGGCAATACGTTGCAGGCAAAGAACGTTCTTTTAACGAACACATCATTAGTACAAACAACAAATCAAGACGAAAAAGACCCGAAATTCCATAAAGTTTTAAAGACTGTTACAATACCAACGAAACAAGTTATAACAAGGCCTAAAATAAACGACCAAAAGAAAGACGATAACAACGATGTATTCCTTAGTCCGACAACTAAATTTATAAGGATTCCAGCGAGTCCGATTAAAGTTTCTAGAAAACGGCCTCGAACTGAACCGTTACAACTACCAGTTTTCCACCAATCGAAATTGCGAGCTACAAGAAGCAAACCACAAGGATTCGCCCGTTATACACCACAGCCGATATTAAATCCACAACGGCCCAGTACTGGATTATATGCAAATTTAAAACCGAAATCAGATGAAGATTCCAGTAATTGGAACAGTGATCCAATTCCAGAAAGTGATTCCACACCACATATAAACGTGGGGCCACAATTCCAATGCAATATTCCTTCTTTTACATCATCCCCAAATCGACATAATCCTGAACCAACTTATGAGGACCTTCTATGGGATCCCGGTATTATCAATTGTACCGATAATGAAGTTGACATGTACTTGGAATTCGCGTGCTGTGCTGCAGTCCCCGGCGGTGGACGGAATAAAGAATACGCCATGCATTTGTTGCATCTATGCAGTGGAAATATACACGAGGCAATGTTGAAATTGATGCAACCATCACCGGTACTACCCGCCGACCATCCACTGTTGGGATATTCGTACAATGAGAGCGATAAATGGACATTAGCAGAAACGGAAATCTTCCACAAAGCTTTGATAAAATATGAAAAAGACTTCAATAGTATTGCGAAAGAAATTGGAACAAAAACAATAAAACAATGTGTACAGTTTTATTACGTTTGGAAGAAAGTCTGTATTGATGAATATCGTAAATTGAAACATCTCCGCGAACGGAGGAATAATTTGAAAGTAATGGAGAACGATATGGATGATAAACCGTATCCAGATGCCAAATTATTAGGGATTGTTGAAAGTGGCTCACCGATGCCGGTACAAGAAACAAGACATTTCTCGTGCGAATTCCCCGATTGTTCAGCCAGTTTCAATTCGCGTGCAGCTCTAAATGGGCATATACGCATCCATGGGGGTACAGCCCGTAATTCACCGACACCATCGAATTTAAATACGGATAAACGTGCCCCTATAGTAAGTTCATCTGTTTGTCATCCTGATTCAACTGAAGATTATCCTTGTAAGATATGCGGGAAGGTGTTTACAAAAATCAAAAGTCGTAGTGCCCATATGAAATCCCATCGTCCACCGGATGCAGAACCGCTAAAGCGCCGTGAAAAAGAACAACCAACGTCATGTACAAGTTTGGAACTTTCCGTGCCAAGTCCGTTTAGTAACACTTAG
Protein Sequence
MASGRTTTVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSTAXXXXXXXXXXXXXXXXXXXXXXXXXXSPAQGAAAGDAASPHGSSCIQYAPPPTASSTTTNTTGKSQLQQLLATEPAKGDNGGNNDGLTKQQLDLIHHIMEQTQRQSQSVNKTTTKPITKPANKTPVKVQRIWTSTTQQTSSNKTSGSATSPQAKVTTTTPSTSPAATSSSTGAAAATTATTTNITNNKAEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDSENKKCEKKDVNGPPLQTASVSVRALIEEKIINKRITNPQPTNNVGDTDNTKPTAPPLFPLTVHSSVNSNDLDTKITSFVVPAAPPPPSQQTTEKARRHSDAEAFNNTSRSVTVTTTTATNQTSTQQKAEALADLILKRDKMTVKRTTSDPGQSTSQIIQFQSNDSFTLTGVTYQSEDGGYLSPSLQDEVFTQVQDTMLLQGVDPHQLASIQFQTDNLLQDQNEQQQLQDISLEDYTNLQEAVVQSNHSVNQELQAVLDSPLPESLAEFSTFHSTTNLDMPSPSYQTQSPAQYTESPHTSLTAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFGQNSLLPMVSPKQEFGQVIERGVDEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGESIPNDIYPLTNSPTPQSPLSVGLTPVPSPLSNIVSTSVPSPHPSTTFTSSANNVSFPLSPHYTLQSQMMPNSDDPLLSSSPKDFVTRKKFEFNGVPLKVISNNGILDLNSANFAGILVDTNGEIKFIQTGGNTLQAKNVLLTNTSLVQTTNQDEKDPKFHKVLKTVTIPTKQVITRPKINDQKKDDNNDVFLSPTTKFIRIPASPIKVSRKRPRTEPLQLPVFHQSKLRATRSKPQGFARYTPQPILNPQRPSTGLYANLKPKSDEDSSNWNSDPIPESDSTPHINVGPQFQCNIPSFTSSPNRHNPEPTYEDLLWDPGIINCTDNEVDMYLEFACCAAVPGGGRNKEYAMHLLHLCSGNIHEAMLKLMQPSPVLPADHPLLGYSYNESDKWTLAETEIFHKALIKYEKDFNSIAKEIGTKTIKQCVQFYYVWKKVCIDEYRKLKHLRERRNNLKVMENDMDDKPYPDAKLLGIVESGSPMPVQETRHFSCEFPDCSASFNSRAALNGHIRIHGGTARNSPTPSNLNTDKRAPIVSSSVCHPDSTEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPLKRREKEQPTSCTSLELSVPSPFSNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00842203;
90% Identity
iTF_01022150;
80% Identity
iTF_00814623;