Basic Information

Insect: Hycleus cichorii
Gene Symbol: -
Assembly: GCA_013841215.1
Location: JACDRQ010000011.1:347257-350340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.1 2.1e+02 2.2 0.7 1 22 226 247 226 249 0.71

2 11 4.3e-05 0.0029 17.5 0.3 1 23 292 315 292 315 0.93

3 11 1.5 1e+02 3.2 0.1 2 19 381 400 380 402 0.90

4 11 1.4 99 3.2 4.3 1 19 412 430 412 435 0.83

5 11 5.7 3.9e+02 1.4 0.2 2 23 443 465 442 465 0.70

6 11 6.7e-06 0.00045 20.0 0.3 1 23 471 493 471 493 0.96

7 11 0.00042 0.029 14.4 4.2 2 23 507 529 506 529 0.95

8 11 0.00012 0.0082 16.1 1.9 1 23 535 557 535 557 0.97

9 11 0.029 2 8.6 8.2 1 23 563 585 563 585 0.98

10 11 0.015 1 9.5 3.5 1 23 591 614 591 614 0.94

11 11 0.62 42 4.4 2.0 1 21 621 641 621 643 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.1	2.1e+02	2.2	0.7	1	22	226	247	226	249	0.71
2	11	4.3e-05	0.0029	17.5	0.3	1	23	292	315	292	315	0.93
3	11	1.5	1e+02	3.2	0.1	2	19	381	400	380	402	0.90
4	11	1.4	99	3.2	4.3	1	19	412	430	412	435	0.83
5	11	5.7	3.9e+02	1.4	0.2	2	23	443	465	442	465	0.70
6	11	6.7e-06	0.00045	20.0	0.3	1	23	471	493	471	493	0.96
7	11	0.00042	0.029	14.4	4.2	2	23	507	529	506	529	0.95
8	11	0.00012	0.0082	16.1	1.9	1	23	535	557	535	557	0.97
9	11	0.029	2	8.6	8.2	1	23	563	585	563	585	0.98
10	11	0.015	1	9.5	3.5	1	23	591	614	591	614	0.94
11	11	0.62	42	4.4	2.0	1	21	621	641	621	643	0.90

Sequence Information

Coding Sequence: ATGGAAAACGAGGATGAATCGACATCGTATTTGAAATTCCTTAACGATACAACCACCCAAAATTATCTACTACAAAATACAGACGGTTTTACCGATATATTACCAGTCGAATCGATATTCACCGAGATCAATTCAGACTGGCACAGTGGGGGCTTTCCGATACTATTAAGTGCACCTCTGATAGCTGGAGAGAATTGTTCTACCGATGCTGATGTTCAATTACTCGCCGAAGAAACGACAAATAGTCCAACAACTGATGATTCGAACAGTAATACGGTAACGTTTTTAGAAAATATTGAAATACCGAATGATACAACAACAATACCGAATAATTTGTTATTAACAAATGATGTTTTGTTACAATTGAAAGATGCAAATGAATGTGACGATAGGGATAATCAGATTAGTGAGGATATTATCAATGATAAAAATACGAAAATTGATACGGTAACTCATATTATAAACGGTAATACTTATTCGATAACAACGTACACGCCACAAATCGATATCGACGAGAATCTCGAAGCAAATGATAATTCGATACAATTATTAAATGTCGACGGTAGTGTGACTACAGTCAATCAAAATTCTTTGAATATAATCGAAAATACAAACAATGAGAGTGATGGTAATAATGTTGGAAGATTTGACGATTATTATTGCGAAATTAAGGCCTACAAGTGTAAAATTTGCTCGTTTTTATCGGAAACTATCGACGATATTACCGGTCATATCCACAATCAACACGGCAAAGAATTGAGGAATACGTCGGAAAATATAACAATAATTAACGATAATGTCGACAGTAGCAATTTAATTGGAGCCAAATTAATGTCGATATTGAATAATAATCGTGAGACGAAACTAACAATGTTTCTATGCAGCGAATGTGGTAATGGTTATTCGAATAAAGACGATTTAAAACAACATATGGTAATGACGCATAATCTAATTTGTGTTCAATCGAATTCTAGTGAAGTCATTAAAGTTAATAATACAGATAATAGTAATAATATACAGAATGATAAGACTGATGTTAGGATAAATAAAATAATCGAAACTAATGAGAAGACAAAGCAATCTGTACGTAATCTATCGGCTACTTTGTTGAAGAAACAGCAGAAATCGATGAAGAAAATTAAATGTTCGATAAAAGGGTGTCCGTTGCGTTTTGCAAGAGACGATCTACGACAACGCCATGAAGATTGTCATGTTAATCAAGAGAAGAATAAATTTCAATGTTCCGTATGCAAACAGAAATTCTCAATGTGGCGTTTATGCAATATGCATTTATGGAAATGCCATTCTATTGATTTGGGTCTATTGAGTTGTCCTGTATGCAATGAATTCAAATCGAATAGCTCAGCACGGATGTTGAACCACATGAGCATACACAACGACGAACGCCCGTTTATTTGTAAAACGTGCGGCAAAGGCTTCAAACAAGCGCCCCAATTGCGCAACCATGAAGTGACCCATCAATCACGCGACAGTGTACCGAATTGGTTGTCGGTGAAACAGTGCGAATTTTGCGATCGTTATTTCACCAATGCCAAATGTTTGAAGAAACACATCAAATTCGTTCACGACAAATTCAAACCGTTCATTTGCAATATTTGCGGACATCAAACGTCCAGAAAAGCAATGCTACAATTGCATTACCGACAACATACCGGCGATAAGCCGCATCAATGTACGTATTGTGATTACAAAACCGGCGATCATAACTGTCTACGGCGGCATCTAATGCGGCATTTTGGCGTGGTGAAGTATTCGTGTCCTTATTGTAATTATCAATGCATTCAAACGACTTCATATAAACAACATTTGGCGAATAAACATCCAGGTAAAGAGGGTATTCATTCGTGTACAATTTGTAATTATACAACAGTGAATGTGGCAGCGTATTTATCGCATGTAAAATGTCACGAACTCGATAAGAAGCTGAAACGTAACAATAAATCCGATAAAATCAACGATAAATCTGTTAATACATCGAAATCGAGTAGTTCTAAAGAGAATTCTAATCCTGTTGAAGACGACGAAACTCAAAGTTGTTTCAATAATGAGCAATCTGAAGAGACTGTCGATACCGGCGGTATAACAATACCGGCCGAATTTGACTTGCCATTAGTTACATAA
Protein Sequence: MENEDESTSYLKFLNDTTTQNYLLQNTDGFTDILPVESIFTEINSDWHSGGFPILLSAPLIAGENCSTDADVQLLAEETTNSPTTDDSNSNTVTFLENIEIPNDTTTIPNNLLLTNDVLLQLKDANECDDRDNQISEDIINDKNTKIDTVTHIINGNTYSITTYTPQIDIDENLEANDNSIQLLNVDGSVTTVNQNSLNIIENTNNESDGNNVGRFDDYYCEIKAYKCKICSFLSETIDDITGHIHNQHGKELRNTSENITIINDNVDSSNLIGAKLMSILNNNRETKLTMFLCSECGNGYSNKDDLKQHMVMTHNLICVQSNSSEVIKVNNTDNSNNIQNDKTDVRINKIIETNEKTKQSVRNLSATLLKKQQKSMKKIKCSIKGCPLRFARDDLRQRHEDCHVNQEKNKFQCSVCKQKFSMWRLCNMHLWKCHSIDLGLLSCPVCNEFKSNSSARMLNHMSIHNDERPFICKTCGKGFKQAPQLRNHEVTHQSRDSVPNWLSVKQCEFCDRYFTNAKCLKKHIKFVHDKFKPFICNICGHQTSRKAMLQLHYRQHTGDKPHQCTYCDYKTGDHNCLRRHLMRHFGVVKYSCPYCNYQCIQTTSYKQHLANKHPGKEGIHSCTICNYTTVNVAAYLSHVKCHELDKKLKRNNKSDKINDKSVNTSKSSSSKENSNPVEDDETQSCFNNEQSEETVDTGGITIPAEFDLPLVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01022571;
90% Identity: iTF_00814675;
80% Identity: -