Basic Information

Insect: Hycleus cichorii
Gene Symbol: RREB1
Assembly: GCA_013841215.1
Location: JACDRQ010000252.1:74952-88986[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00062 0.042 13.9 0.9 1 23 110 132 110 132 0.98

2 16 0.00029 0.019 14.9 0.4 1 23 149 171 149 171 0.98

3 16 4.1e-05 0.0028 17.6 6.4 1 23 177 199 177 199 0.98

4 16 4.6 3.2e+02 1.7 0.2 1 8 275 282 275 299 0.74

5 16 0.19 13 6.0 2.1 2 23 305 327 304 327 0.96

6 16 0.45 30 4.9 0.9 1 20 373 392 373 394 0.91

7 16 0.049 3.3 7.9 0.1 1 23 541 563 541 563 0.96

8 16 5.5e-06 0.00037 20.3 0.8 1 23 572 594 572 594 0.99

9 16 0.00056 0.038 14.0 3.1 1 23 600 623 600 623 0.97

10 16 0.00033 0.023 14.7 3.0 1 23 995 1018 995 1018 0.97

11 16 0.00037 0.026 14.5 0.5 2 23 1226 1247 1225 1247 0.97

12 16 0.085 5.8 7.1 6.3 1 23 1253 1276 1253 1276 0.97

13 16 0.0084 0.57 10.3 1.2 1 20 1309 1329 1309 1330 0.95

14 16 0.0067 0.46 10.6 1.1 1 23 1396 1419 1396 1419 0.95

15 16 0.011 0.77 9.9 0.4 3 23 1475 1495 1473 1495 0.93

16 16 0.0051 0.35 11.0 5.9 1 23 1501 1523 1501 1523 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00062	0.042	13.9	0.9	1	23	110	132	110	132	0.98
2	16	0.00029	0.019	14.9	0.4	1	23	149	171	149	171	0.98
3	16	4.1e-05	0.0028	17.6	6.4	1	23	177	199	177	199	0.98
4	16	4.6	3.2e+02	1.7	0.2	1	8	275	282	275	299	0.74
5	16	0.19	13	6.0	2.1	2	23	305	327	304	327	0.96
6	16	0.45	30	4.9	0.9	1	20	373	392	373	394	0.91
7	16	0.049	3.3	7.9	0.1	1	23	541	563	541	563	0.96
8	16	5.5e-06	0.00037	20.3	0.8	1	23	572	594	572	594	0.99
9	16	0.00056	0.038	14.0	3.1	1	23	600	623	600	623	0.97
10	16	0.00033	0.023	14.7	3.0	1	23	995	1018	995	1018	0.97
11	16	0.00037	0.026	14.5	0.5	2	23	1226	1247	1225	1247	0.97
12	16	0.085	5.8	7.1	6.3	1	23	1253	1276	1253	1276	0.97
13	16	0.0084	0.57	10.3	1.2	1	20	1309	1329	1309	1330	0.95
14	16	0.0067	0.46	10.6	1.1	1	23	1396	1419	1396	1419	0.95
15	16	0.011	0.77	9.9	0.4	3	23	1475	1495	1473	1495	0.93
16	16	0.0051	0.35	11.0	5.9	1	23	1501	1523	1501	1523	0.98

Sequence Information

Coding Sequence: ATGCAAGGCGTTGTCTTCATGCCCCAAAATCCGCAACAAGGCTCGCCGCCACCAAACAACACACTAGTTACCGATATTGTAACAATGGAAACATCATCCGAACCAAATGATTTAACCAAAGAGAAACAATTTAATAACCAAAGCAACAATCAGAACGACTCAGGCATTTATTCGATAACGAATTCAACAATTAATAGTGAATCACCAATGGAGACGACAATTAATACAACTCTACATTCCGATAATTGTGATAATTATGGTAGTGATTCTAGTAGGACGCCATCACCGCCAACAACAACCAACCAAGATGAAGAACAAGAGAAACATTACATATGTCCGATTTGTGATAAAACTCTGTTATCACAACACGAATTCACTTTACATATACGTTCGCATAATAACGAAACAATAACCGAATTAAACCACATCGATAATGATAAGGGCTTCACATGCCGTATTTGTTATAAAGTATTAAGTTCAAGTTCTAGTTTAGATCGGCATGTTTTAGTCCATAGTGGCGAACGGCCATTTCATTGCAAATATTGCGGCGATACCTTCACAACGAATGGTAATATGCATCGACATATGCGTACACATTCAAATAACAATAATATTAGTAATAATAATAATAATAAGTTTGATAATTACGAATCTGATGGTAGTATTGATAGTAGTCTTAGTACAAATTCTAAAAATACCGAATTTAATAATAATATTAACACAAAATTGGATCGAATCGAATCGAGGAAGCGTAAATTCGAGGAAGATGACGATATTGATGGTGATTATGATGAGAATCAATTCGATAACGACCAACAAATTTATAAATGTCCGGTTTGTGAACGGAACGATTTCAATTCGATAAAAGTTTTAGAGACCCATTTGGAGGATAATCATCCGGATTATCCAGTTAAATGTAATCAATGCAATCAAATCTTACAAAATCATAAAATGTTAACAATACATCGTACAACAATACATGATAATAATCAAACAAAACACCATGTATATGGTTTTAAAGATTTAACATTTGTTGATTTTTCTAGTGAGAAATTTCCACATATTGCACGTTATGAATGCGAAAAGAATTTACATAAAGTTAATAGTGGTTTACGTTTTCAATGTCGTAAATGTTCAAGAGCATTCCCATGTTCGAATTCATTAGAAATACATGAAAATGATTGTGTTTTAATTGATAATAATAATGGTTTAGATTTAACAAAAACAACACCAACAACAATAACAACAACAACCGCACAATTATCGGAGAATGATATCAAAAGGAACGAATTCTTTTCGCGATTAAATCTACAAGACAACTCACCGGAGAAATCCAACACTATACCGCCAATATTGAATGAAACTTCAACGAAATTACGCCAACAATTATTAGCAAAAGCGATGAATTTCGAAACAACCAAAGATCTAGCCGATATACAATCGATAATATCGATGACAACAAATGGTAGTCTATTACAACAATTACAAACGAAAAATGATGGAATTTTAAACAAACAAAACGAACAGAACGATTATAATCGCCAAACCAACGACCAACAAGAAGAAGAAACGCAAGATTTATTCGCGGTCGAATTTCGAAAGATGAAACTACGCGGGGAATTCCCCTGTCGCTTGTGTACAGCAGTATTTCCGAATTTGCGCGCGTTAAAAGGCCACAATCGCGCCCATTTAAACAGCAATAATAACGGTATGTATCGGTGTAATATGTGTCCACATTCATCGATTGATAAAGCGGCGTTAATTCGCCATATGCGTACACATAATGGTGATCGTCCCTATGAGTGTTCGTTGTGTAATTATGCGTTTACAACAAAAGCGAATTGTGAACGTCATTTACGCAATCGTCATGCGAAATCGACACGTGAAGAAGTCAAAAAATCGATAATCTACCACCCATCGGAAGATCCAACTAATGAAGATTTGAATAAATTGGCACGTGATGATCGTAAATTGAATCTAACAAGTGGTGATTCTTCCAGTGATTTATCCACAGAAAAACTTGTAACCAAACGTAATAATAACGATGGATTTATACCGAATTTATTGAAAGAAACTCTACAGAAAGACACGAAAATTTTCCACCACAACATCACCGATATTATCCGCAATGAGAATATCAAATCATTGAAAGATCACAGTATTGAAAATGGACAATTATCGCCGTATTTACCACAATACAATTACTCACCGAAAAATTCGAATATTTCAACCCCCACAACAGCGCATCCCCCATCGAAGATTCAAGTGAAAAGTTTGGAAGCTCTAAAAGAACCGAATTTCGATGATAACCATTCCGATTCCGATAACAATGATAATGAAGATGAACCGATGGTGTTGGATTTGAGTAAAAAACGGATCGATGAGGAGATAGTACCGGAGGATTTATCGAGAAAATCGTTAACACCACCACCATTATTATTGCCGCCACCAACTCAATTGAATATGGGCGAGATTTTTGCTCAACAATTATTGAAGACAACACCACCGAAAATTGATCCGGCCGCTCTGTATGCAACCCAATTGGCTTTAGCTAGGAATAGTTTTGCTAGTTTTGGAAATTGGCCCGGTTTTCCGATCAATCATCTATTATTTCAATCGTTACAACAGCCGATTTTATCACAAGATACCCAGGATATTAAAGAACGTTTACAACGCTATCAATTGTGTGGTGGTGGTAATTTGATTACCGACAATTTCACCGAACGTTTGAAGAGTTTACAGAATTTTCCAAATTATAAATTGACAACGAACGATACGAATGAGAAGAAGATTGATGATTTGAAACCGTTGAATATCGATACGAATTATAACGAAAATTTGAATGTTAATCTACAAAGTCCGGTGGCAACAACGAAACAACAACCGGATCTAGTACAATCGCCGAATTCTGTAAAAATGGTGATAAAAAATGGTGTTTTAATGCCAAAACAGAAACAACGCCGTTATCGCACTGAACGCCCATTCACATGTGAACATTGTTCAGCTCGATTTACATTACGTTCGAATATGGAACGGCATATTAAACAACAACATCCACAATTTTGGTCGCAACGACAACGCGGTCTTGGTACACCTGGACGGAAAATACAAACAACACCTGTTAAAGGTTATTGCGATATTAATATACCGAATTATGAATCGCAAAAGAGCTCAGATATGGACGATACAACAACATTAGCAACAATTAAAACCGAACAAATCGATGAGAAATTGAAATTCGCCCTATTATCACAACATCTACAAGGCAATAGCGATATCAAGAAAGAAGAAGAAGATGATTGCGCCCTAATTATCGATGAGAATTTGGAGAAAGAGGATAAAAATCGAATTTTGGAAGATAAACTCCGAGAACTCCATGCGAAACAATTGAAGAATGATAGTAATAAATTGATAAAACAGGAAGAAAATCAAGATCTTGTATCAGTATCTCGATTATTAGATAACGCGTCACAACAACAATTCAAAGAGTATTTCAAACGTGAAGGTGAAGAACAAGAAACTGGCGGTGGTAGTGAAGAAGATGAGGAAGGTTTAATTGCTAGCGGTAGTACTAGTGAAGGCAATATTTCCGGTACCGATGAAAATAGATCTGAATCTGAAGCTCCACCACCAGTGAAGAAGAAATCAGCGTATTCGATGGCGCCAAATCGCGTTAGTTGTCCGTTTTGTAGCCGAAAATTCCCGTGGAGTTCATCATTACGTCGCCATATTTTAACCCATACCGGTCAAAAACCGTTCAAATGCAGCCATTGTCCTTTATTATTTACAACGAAATCGAATTGTGATCGACATTTGTTGAGGAAACATGGCAATACGGCCACAACAATAATCAACGATATTACCAATAATAATAACAATAATAATAATGCGAATTATTTGATGAGGAATGTGCCCGAACGGCCGTTCAAATGCTCAAATTGTCCAAGTAGTACATTTTCGACTTATTCGAATTTAAAGAAACACATCAGTTGTAAGCATTCAACGAATGCTCAAGGCGACGATATTCGGGCGCAAGGCTACGAGGCTGGCAGTTCAGAAGACGAGAAACTCTCAACTGAATCCACACAACAACCCCAACAACAACAGAAAACAACAAACGAATGGAATGATAACCAAATCAACCACATAAAAACTGAAACAATTATAACAAATTCCGATTTACCGTTCAAATGCCATTTGTGTGACGGTTCATTTAGTGACCGCCAGGACGCTTTAGATCACATCAAAGACAAGCATTTCTCCGAATACGATTTATTGATGTCGAAAAACGCTTTAGATAGTACCGCAACGGTACCAACTACAACACCAGCAACGACAACAACAACCGACGACCATCACAATGAAGATGAAGAGAACGATATTCGCGGTAAATTCCCCGATTATTCCAATCGTAAAGTGATTTGTGCCTTTTGTATGCGTCGTTTTTGGTCGGCGGAAGATCTACGCCGACATATGCGCACCCATACCGGTGAACGTCCATTCAGTTGTGATATTTGCCGGCGTCGGTTTACGTTAAAACACAGCATGTTGCGGCATCGCAAGAAGCATAATGTTAATTTCGATCATGACAATTGTAATAATAGTGATGATGATAATTTAGAGAAATATAGTAAAGGTCTTATTAGTGGTGGTGGGATCGGTGGTGGTGATAATTTCAAACATGGGGATAAAACTGAGGAATCTGATGGCAATGAAGGTGGTGATTTAATTAGTAATCTATTAGGTATAAGGGATCGGTCGTTTATTGATAAAGTGTTAACGGCATCGCCTGATGATGTTGCTAAACTATTGGGTGTTAAAAATGGTATTAAAGAATAA
Protein Sequence: MQGVVFMPQNPQQGSPPPNNTLVTDIVTMETSSEPNDLTKEKQFNNQSNNQNDSGIYSITNSTINSESPMETTINTTLHSDNCDNYGSDSSRTPSPPTTTNQDEEQEKHYICPICDKTLLSQHEFTLHIRSHNNETITELNHIDNDKGFTCRICYKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSNNNNISNNNNNKFDNYESDGSIDSSLSTNSKNTEFNNNINTKLDRIESRKRKFEEDDDIDGDYDENQFDNDQQIYKCPVCERNDFNSIKVLETHLEDNHPDYPVKCNQCNQILQNHKMLTIHRTTIHDNNQTKHHVYGFKDLTFVDFSSEKFPHIARYECEKNLHKVNSGLRFQCRKCSRAFPCSNSLEIHENDCVLIDNNNGLDLTKTTPTTITTTTAQLSENDIKRNEFFSRLNLQDNSPEKSNTIPPILNETSTKLRQQLLAKAMNFETTKDLADIQSIISMTTNGSLLQQLQTKNDGILNKQNEQNDYNRQTNDQQEEETQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNSNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKSTREEVKKSIIYHPSEDPTNEDLNKLARDDRKLNLTSGDSSSDLSTEKLVTKRNNNDGFIPNLLKETLQKDTKIFHHNITDIIRNENIKSLKDHSIENGQLSPYLPQYNYSPKNSNISTPTTAHPPSKIQVKSLEALKEPNFDDNHSDSDNNDNEDEPMVLDLSKKRIDEEIVPEDLSRKSLTPPPLLLPPPTQLNMGEIFAQQLLKTTPPKIDPAALYATQLALARNSFASFGNWPGFPINHLLFQSLQQPILSQDTQDIKERLQRYQLCGGGNLITDNFTERLKSLQNFPNYKLTTNDTNEKKIDDLKPLNIDTNYNENLNVNLQSPVATTKQQPDLVQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGLGTPGRKIQTTPVKGYCDINIPNYESQKSSDMDDTTTLATIKTEQIDEKLKFALLSQHLQGNSDIKKEEEDDCALIIDENLEKEDKNRILEDKLRELHAKQLKNDSNKLIKQEENQDLVSVSRLLDNASQQQFKEYFKREGEEQETGGGSEEDEEGLIASGSTSEGNISGTDENRSESEAPPPVKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNTATTIINDITNNNNNNNNANYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIRAQGYEAGSSEDEKLSTESTQQPQQQQKTTNEWNDNQINHIKTETIITNSDLPFKCHLCDGSFSDRQDALDHIKDKHFSEYDLLMSKNALDSTATVPTTTPATTTTTDDHHNEDEENDIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDHDNCNNSDDDNLEKYSKGLISGGGIGGGDNFKHGDKTEESDGNEGGDLISNLLGIRDRSFIDKVLTASPDDVAKLLGVKNGIKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00814598;
90% Identity: iTF_00814598;
80% Identity: -