Basic Information

Insect: Hycleus cichorii
Gene Symbol: -
Assembly: GCA_013841215.1
Location: JACDRQ010000146.1:129298-132822[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2e-05 0.0015 18.4 0.7 1 23 221 243 221 243 0.95

2 15 0.00099 0.067 13.2 1.2 3 23 251 271 250 271 0.99

3 15 8.5e-05 0.0058 16.6 0.1 1 23 391 413 391 413 0.98

4 15 0.0013 0.086 12.9 0.2 1 23 419 442 419 442 0.98

5 15 2.7e-07 1.9e-05 24.4 3.0 1 23 474 496 474 496 0.98

6 15 0.0034 0.23 11.5 0.0 1 23 509 531 509 531 0.95

7 15 0.084 5.7 7.1 0.9 1 23 537 560 537 560 0.96

8 15 0.047 3.2 7.9 1.9 2 19 568 585 568 586 0.96

9 15 0.00019 0.013 15.5 3.6 1 23 595 617 595 617 0.97

10 15 0.0027 0.19 11.8 0.3 2 23 623 644 622 644 0.96

11 15 7.1e-06 0.00048 20.0 0.4 1 23 652 674 652 674 0.98

12 15 0.0031 0.21 11.7 0.2 3 23 682 702 680 702 0.97

13 15 9.8e-05 0.0066 16.4 0.3 1 23 708 730 708 731 0.95

14 15 0.028 1.9 8.6 1.5 1 23 745 767 745 767 0.96

15 15 0.0037 0.25 11.4 0.1 1 20 1151 1170 1151 1173 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2e-05	0.0015	18.4	0.7	1	23	221	243	221	243	0.95
2	15	0.00099	0.067	13.2	1.2	3	23	251	271	250	271	0.99
3	15	8.5e-05	0.0058	16.6	0.1	1	23	391	413	391	413	0.98
4	15	0.0013	0.086	12.9	0.2	1	23	419	442	419	442	0.98
5	15	2.7e-07	1.9e-05	24.4	3.0	1	23	474	496	474	496	0.98
6	15	0.0034	0.23	11.5	0.0	1	23	509	531	509	531	0.95
7	15	0.084	5.7	7.1	0.9	1	23	537	560	537	560	0.96
8	15	0.047	3.2	7.9	1.9	2	19	568	585	568	586	0.96
9	15	0.00019	0.013	15.5	3.6	1	23	595	617	595	617	0.97
10	15	0.0027	0.19	11.8	0.3	2	23	623	644	622	644	0.96
11	15	7.1e-06	0.00048	20.0	0.4	1	23	652	674	652	674	0.98
12	15	0.0031	0.21	11.7	0.2	3	23	682	702	680	702	0.97
13	15	9.8e-05	0.0066	16.4	0.3	1	23	708	730	708	731	0.95
14	15	0.028	1.9	8.6	1.5	1	23	745	767	745	767	0.96
15	15	0.0037	0.25	11.4	0.1	1	20	1151	1170	1151	1173	0.93

Sequence Information

Coding Sequence: ATGGAAGATAATTTCGCATTAACGTGGGAGGACCCGGCAACAGTTGTACAAAGTGAAGAAGTAATTTGTAGTATTGAAAATGAAATATTACCAAATGAATCGGAAGAATTTACTGGTGTTGTTAGTAATGAACAAACAGCCGATACTACAGTAACAATTGAAGAACATGAAGAATATGAAGAAGAAATGGAAGAGATTGTCAATGATGGCGACGGTGGACTAGAGGAACAAATTGAAGAAGAAGAAGAAGATGATGATGATGAAGAAGTTGTAATTGGTGATGATCAACAAATCGTCCAAGAAGTTGTAGAAACTGTTAATAATGAAACTGAAGTTGTACATCCAGACAATATTGTCTATTTAACTGATGATAATGTTATTGTAATGCAATCGGATGATGTTGTTGCCGATGAAATAATAGAAGAAATACCAATACAAACAAATAATGATACAATTACAACAAATGATAATAATTTCCAACAACATTTTATGGATTGTCAAGTATCCGAAGAGATTGTAACTGAACAATGGGATGAAAGTTGTCCGGAAGAAATTGTTGTTGGTAGTGAAGAGGCTGTTGGCGGTACAGAAGAACAAACAAATGAAGATTTCGATATACCATTACCAACCGATCAAGATGAATATACAGCATCAAGACCGTATCCATGTGATTTTTGTAGTCGTCGTTTTCGTAAAAAAGCCAATTTAATGAATCATATGGTAGCACATCAAACTGATCGTCCACATGGTTGTAATTTATGCGGTGTACGTTATATACGAAAATGTGATTTAATGAATCATTTAAAAATCCATGCTTATGTACCGGAAACTGATGGTATTGAAGAAGAGGAAACACAACAATTTGATGAATCCGATCAAGAGAAACGTAATAGTAGTAGTATTATCAATAATAATAATAATAATAGTAATAAGAAGATACGATCGTTTGGTAAACGCAATAAAAAGAAAATTAAAGACGAATATGATAATTATGAGAATGATGAAACTGGAGCGTCCAGTTCGAAATCTTATAATTATGTTGATGAAGATATGCGTTTAATGGAAGCAATGCAGAATAATGTAAAAAACGATTATAATGAATATACTGAATATATAAGTGAAAATCAAACAGTTGACGTACGTTATCCAATCACCGATCCACGTAAACCATTCGTTTGTCAACATTGTGGCGTTGGTTTTGCTAGAGAGAAAGCATTAGCCTCCCATGCCCGTATACATGGTGGTGATAGTCCATTTGAATGTCAAAAATGTGGTGAAATGTTTTGGGATTTAGCATTAATGCGCGAACATATACGTACAAAACATGCTAGTGATTTTGATGATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTATTCGGATGATGAAACAAAATATGGTACATTCTATTGTTCAGTTTGTGGTTTATCATTTCATCGACAAGATAATTTGAAACGCCATCAACGTGTCCATATTAAAGAAGAATTTGTTAATGATCATGAATTCGGTCATATTTGTAATGTTTGTGGTGAATCATTCCCGGAAGCTTTAGATTTATTAGCACACGCTGAAGTACATGCACGTACATCGGATCATCGTTGTATGATTTGTGGTGAAATTTGTACCGATGATCAATCGGTGGCTGTACATGTCCAAACGAAACATGGTAAAAATCTACCACCGAATACTTGTATGTTGTGCGGCCGTACATGTAAAGATCGTCGTACATTATTGAAACATTCATGGGAACATTCGAAGGAGAAAAGTTTTGCATGTTCGAAATGTGCAAAAACATTTCATAATAAAGCCCGTTTAAAACGCCATATGTTGTCGCATCGTAATAAAGTTGTATCGTGCGATGTATGCGGTGAAGAATTCCCAGATGGACGTTCATTAATGAACCATCGACATAGTCATAGTAGTTTAACTGGACGACAATTTCCATGTCGGGAATGTGGTAAAACGTTCGGTTCACGTAGTTCCCAACAAATCCATATACGTATCCATACTGGTGAACGGCCATACGGTTGTCGTTTCTGTTGGAAAGCATTCGCCGATGGTGGTACATTAAGGAAACACGAACGTATCCATACTGGTGAAAAACCATACGCTTGTGCTGTATGTCCGCGTGCTTTCAATCAACGTGTCGTTTTACGAGAACATATACGTTCACATCATTCCGGACCAGATCCGAAATATTCACATAGTGTTACACCGTATTGTTGTTCAGTATGTTCGGATATGTTTGCAACATCACAAGATTTAATTGTACATTTAATCCATCATTGTGATATGAATACGGCTATGAAGAGACAACCACAAGTTGGACCAAGAAAATATAAACGTCGACGGAAATTGAAACCGCACGAATTAGAAATGATATCGAATAAAGTTGATGATGAAATCGATGAGGAAGACGAACAACAACAACAACAACAACAATACAATCAACAACAACAATATCAACCCGAACAACAACAACAACAACAACAACAAATCTATACAGATTCGGAGGATGATCGTGAAACACGCCGTAAAACCAACAACAAGAAAACCAAAAAATATTCACCGAAATCAAGTCTAAGTGATTCCTATAATGATTTCTATAATAGTTGTACATCAACTATAGAAAATATAAATTCGATTGTTAATTCGAAAACAACAACACCGTTGAAGACGAAACGTAAAATTAAAAATGAATCAACAACTGGTACAACGGCAACAACTACAACAACACCAATACCGTCACGGCCGAAAATGATACACACGCAAAAGACACGTGTCCCTGTCGAAACCGGTGAAGATGGTAAAGTTAGGCATAAAACGAAAACGTTAATCACACGTACACAACCAACGGAATTGAAATCATCAACAGGTGAACGTATACGGCCACGTACAAAGAATGTGAGTTATCATATATTGAATAATGAGAAATTACCAATTGCCACGTTCCCAGAGGACGATCAAGCCGTTGATAATTTATTAAAAGACGAATTAAGTGTAAATAATGAACAGAATATTACTCATAATAATAATAATGGTGATATTGTGATGGAACAAACTGAACAAACACCAGAGGTAGCATCTGAGCAGATTATTGAAAGCGACAACGGTGCATTCCCAACGAATATCATTAAAGTAACATCGACACCGACTCAATTACATAATCTACGTCCCGGTCGGCATTTAATCGTACCGTATAATAAAGTTCGTATAGTTAAAGGCGGTATGATTGTAACGAAAAGTAAGGAGAAAGAGAAGCGCAATAATGAACCGGAAAATATACTACCGGACGTTGAAACTGATAATAATAATGATGGTGGTAGTGGTGGTGGTGGTAATAATAGAGATTTGGCTAAAATTAAACAGGAAATTGTCGATCCGAGTCCGTTACATGAACTAGCTGAAATATCGATGCAACATGCACAAAATATTTTTAAATGTGAAATGTGTAGTGCCGTTTTCTCAGATCGGGGTAAACTATTAGATCATGTACCGATACATATATGA
Protein Sequence: MEDNFALTWEDPATVVQSEEVICSIENEILPNESEEFTGVVSNEQTADTTVTIEEHEEYEEEMEEIVNDGDGGLEEQIEEEEEDDDDEEVVIGDDQQIVQEVVETVNNETEVVHPDNIVYLTDDNVIVMQSDDVVADEIIEEIPIQTNNDTITTNDNNFQQHFMDCQVSEEIVTEQWDESCPEEIVVGSEEAVGGTEEQTNEDFDIPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYVPETDGIEEEETQQFDESDQEKRNSSSIINNNNNNSNKKIRSFGKRNKKKIKDEYDNYENDETGASSSKSYNYVDEDMRLMEAMQNNVKNDYNEYTEYISENQTVDVRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDLALMREHIRTKHASDFDDLXXXXXXXXXXXXXDYSDDETKYGTFYCSVCGLSFHRQDNLKRHQRVHIKEEFVNDHEFGHICNVCGESFPEALDLLAHAEVHARTSDHRCMICGEICTDDQSVAVHVQTKHGKNLPPNTCMLCGRTCKDRRTLLKHSWEHSKEKSFACSKCAKTFHNKARLKRHMLSHRNKVVSCDVCGEEFPDGRSLMNHRHSHSSLTGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSVTPYCCSVCSDMFATSQDLIVHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMISNKVDDEIDEEDEQQQQQQQYNQQQQYQPEQQQQQQQQIYTDSEDDRETRRKTNNKKTKKYSPKSSLSDSYNDFYNSCTSTIENINSIVNSKTTTPLKTKRKIKNESTTGTTATTTTTPIPSRPKMIHTQKTRVPVETGEDGKVRHKTKTLITRTQPTELKSSTGERIRPRTKNVSYHILNNEKLPIATFPEDDQAVDNLLKDELSVNNEQNITHNNNNGDIVMEQTEQTPEVASEQIIESDNGAFPTNIIKVTSTPTQLHNLRPGRHLIVPYNKVRIVKGGMIVTKSKEKEKRNNEPENILPDVETDNNNDGGSGGGGNNRDLAKIKQEIVDPSPLHELAEISMQHAQNIFKCEMCSAVFSDRGKLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987317;
90% Identity: iTF_00814568;
80% Identity: -