Basic Information

Insect: Hycleus cichorii
Gene Symbol: -
Assembly: GCA_013841215.1
Location: JACDRQ010000008.1:442113-447211[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0028 0.19 11.8 4.7 1 23 149 171 149 171 0.99

2 16 0.0011 0.074 13.1 7.7 2 23 178 199 178 199 0.98

3 16 0.00017 0.011 15.6 2.2 1 23 222 244 222 244 0.97

4 16 0.0014 0.094 12.8 1.0 1 23 311 333 311 333 0.99

5 16 1.9e-06 0.00013 21.8 3.7 2 23 340 361 339 361 0.97

6 16 7e-05 0.0048 16.8 4.5 2 23 378 400 377 400 0.97

7 16 7.8e-05 0.0053 16.7 4.6 1 23 489 511 489 511 0.97

8 16 0.00093 0.064 13.3 1.1 1 23 517 540 517 540 0.92

9 16 5.2e-07 3.5e-05 23.5 1.0 1 23 545 567 545 567 0.98

10 16 2.1e-07 1.4e-05 24.8 1.9 2 23 579 600 578 600 0.96

11 16 2.5e-08 1.7e-06 27.7 1.4 1 23 607 629 607 629 0.98

12 16 1.7e-05 0.0011 18.8 1.6 3 23 641 661 639 661 0.92

13 16 0.00015 0.01 15.8 5.1 1 23 667 689 667 689 0.99

14 16 1.2e-05 0.0008 19.3 4.2 1 23 695 717 695 717 0.98

15 16 7.6e-08 5.2e-06 26.2 0.4 1 23 723 745 723 745 0.99

16 16 0.00013 0.0089 16.0 0.1 1 23 751 775 751 775 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0028	0.19	11.8	4.7	1	23	149	171	149	171	0.99
2	16	0.0011	0.074	13.1	7.7	2	23	178	199	178	199	0.98
3	16	0.00017	0.011	15.6	2.2	1	23	222	244	222	244	0.97
4	16	0.0014	0.094	12.8	1.0	1	23	311	333	311	333	0.99
5	16	1.9e-06	0.00013	21.8	3.7	2	23	340	361	339	361	0.97
6	16	7e-05	0.0048	16.8	4.5	2	23	378	400	377	400	0.97
7	16	7.8e-05	0.0053	16.7	4.6	1	23	489	511	489	511	0.97
8	16	0.00093	0.064	13.3	1.1	1	23	517	540	517	540	0.92
9	16	5.2e-07	3.5e-05	23.5	1.0	1	23	545	567	545	567	0.98
10	16	2.1e-07	1.4e-05	24.8	1.9	2	23	579	600	578	600	0.96
11	16	2.5e-08	1.7e-06	27.7	1.4	1	23	607	629	607	629	0.98
12	16	1.7e-05	0.0011	18.8	1.6	3	23	641	661	639	661	0.92
13	16	0.00015	0.01	15.8	5.1	1	23	667	689	667	689	0.99
14	16	1.2e-05	0.0008	19.3	4.2	1	23	695	717	695	717	0.98
15	16	7.6e-08	5.2e-06	26.2	0.4	1	23	723	745	723	745	0.99
16	16	0.00013	0.0089	16.0	0.1	1	23	751	775	751	775	0.92

Sequence Information

Coding Sequence: ATGATTAATAAATCAACGGAATTAGCAATTGATAAAATATGTCGTTCATGTATGTGTCAAGATGATGGTAATAATATGCGAAATGTATTCGAAACGAGAGAATTCTGCGGACAAACATTACAAATTGCTGACATTTTAATGGATTGTGCATCAATTAATGTATCGAACAGTGATGGTTTACCGAAATTATTATGCGAAAATTGTGCGAATAAATTGAATTTAGTTTATGAATTCCGTAAACAATGCCAAAATTCTGATTCAACATTGAGACAATTAACCAATCAATCCGTATCTGTACCAGGAATTAAAGAGGAGAGTCTCGATATTGTTGTGCAGCCCGATTTCAATATTCCCACCTTATTTCAGGAATCAGATAGTGAGAACGAGGCGGATGATGACGATGATGATAGTATTAAAAGTACAAAATCGAAACAGAAACCGATATTTACATGTACATTTTGTCAGAAGATTTTACATACAAAAAAAGGTCTACGTATACATCAACGTCGACATACTGGTGAACGTTTACGACAATGTCATATGTGTAATGCCCAATTTACACGTACACATCATTTAGTGAGGCATATGAAATTGCATTGTAAAAAAACAAAATCAACAACAAATACACCAACAAGTACAACAACTACAAGTACAGAAACTGGACATGTTTGTAGTGAATGTGGTCAATCTTTTATGAAATTAACGAATTTATTATCGCATAAGAAAATGCATAAATCTACAATAATAAAAGAGGCTAATGACGATAAAATTGTTAGTGCTAGTGGTGATAACGATAATGATCAACAATCATCTGCTACTACTACAATAAATAATACAAATAACGATGATGATGATTATGGTGGTGGTAGTGATGATTTCGACGATTTCTTCAAATTAAAAACGAAATCAACAAAAAAAGATAAAGGTACATATGAATGTAAATATTGTTTAAAAATAATGACAACATTTGTTGGTTTAAAAATCCATATGAGACGGCATACCGGTGATGATCTATCAGAATGTCAATTATGTGAGAAGAGTTTCACAAAAAGTAGTCATTTAAAACGACATTTATTAACGCACGGTATTAAAGATATTGAAAAAATTAAACCAATTGAAAAGAAAGTTATGGAATGTGAATTTTGTGATCGTAAATTTAAATATAAGAAGAGTTTCAATCATCATATGCAAACTGAACATGGTATGTCCGATGAAAGTGATGTACCATTAAGTACTTATGTTGCAAAGATTAGTGATAATAAAACGAAAGATAATAAAAATGATGGTGATAATATTGATGGTGGTAAAGAAGAGACAGCAACTTCTACCACAATTCAAGATGAATCTTTACAACAATCCGAAGATACTAAAGATAATAATAATAGTAATAGTAGTAATAGTAGTGGTTTTAGTGGTAATATTAATAATACACAACAATTAACAAAGACTGGTAATCATAAAATACATACATGTCATGTGTGTGATGCACAATTTGTGCGTGCAAATCATTTAACACGCCATATGACATTACATCGTGCTATATTAATACATAAATGTGATCGTTGTGATAAAGCCTATGCAACATTAGAACATTTAGGTAAACATGTTGAAGAAGATCATATAAATAAACCATATGAATGTACAATATGTAATAAACCATTTAGTAGAGGTGAACATTTAATAAGACATTTAAAAATCCATCAAAATAATAATAACGAAAAAAGTGATAATTTAAATTGTTCAATATGTCAGAAAACATTCAGTCGTTCAGATCATTTAGCACGTCATATTAAAATACATTTATTACAAGATAAACGGCATGTATGTAATGATTGTGGAAAGGCATTTAATCGTTTAGATAATTTGAAAACACACCAACGTATCCATACAGGTATTAAAGATACAACAAAACTACATTTGTGTATCTATTGTGGCAAAGAATTCAATAATTCTAGCAATATGATTGTCCACATGAGACGCCATACGGGAGAACGTCCGTACAAATGCAGCCAATGCGGTAAAGGTTTTCCACGATCGCACGATCTCAAATGTCACGAACGTACACATTCTGGTGAAAAACCCTATCATTGTACACTTTGTGGAAAGTCTTTCAATAAAAGCAACAAATTGTTGCGACATACTCGGGTACATACTGGTGAACGTCCGTATGTTTGTAGTATTTGTGGTCGGGCTTTCACACAATCCAACGATTTATCATTACATATGCGCCGCCATACTGGTGCCCGTCCTTATGCTTGTGGCGTATGTCCAGCACGTTTCATACAATCAGGTCAATTGAAGGCGCATCGTCGTTCAACTGGTCATTGGATGGAAACCCAACCGGAATTGAAAGGTGGCCATCGTGTTGAACCAGTTACACCAGTATTAGATCCGGCACCGATACGTTTTAAAACCCATGGTAAACAACGAAAAAGTAACGAACTTGATGATGATATTGATAATTGTGTTGATGATGAGGATAGAAAAAATACGAAATTACTTAATCAAACAATGAATATAATGAGTGGTATTAATTTACAAGGACAATCAATAATGATGGATGCATCGAAATTAGTTGAATTGCAAAATACAGGTTTTATAAATTTAATTAATACAACAACAGCTGGTACAAGTGGTGGTAATAGTGTATTAAAATACAAAACTATCGATAATAGTGATAATACAGGACAATTTAATGTTTGCGGACAGATTATTAAAACTGAAAGTAATATTGTTAAGCCATTAGATGATGTTGAGAAAATACCAACAACAATAACGAATTTTCCAAGGGATACAGCAACAGTAACGTATTCGATTGTCGCACCGACTACTACATTCACAACAACAGATTATAGCTACCAGAATTACGGTTAA
Protein Sequence: MINKSTELAIDKICRSCMCQDDGNNMRNVFETREFCGQTLQIADILMDCASINVSNSDGLPKLLCENCANKLNLVYEFRKQCQNSDSTLRQLTNQSVSVPGIKEESLDIVVQPDFNIPTLFQESDSENEADDDDDDSIKSTKSKQKPIFTCTFCQKILHTKKGLRIHQRRHTGERLRQCHMCNAQFTRTHHLVRHMKLHCKKTKSTTNTPTSTTTTSTETGHVCSECGQSFMKLTNLLSHKKMHKSTIIKEANDDKIVSASGDNDNDQQSSATTTINNTNNDDDDYGGGSDDFDDFFKLKTKSTKKDKGTYECKYCLKIMTTFVGLKIHMRRHTGDDLSECQLCEKSFTKSSHLKRHLLTHGIKDIEKIKPIEKKVMECEFCDRKFKYKKSFNHHMQTEHGMSDESDVPLSTYVAKISDNKTKDNKNDGDNIDGGKEETATSTTIQDESLQQSEDTKDNNNSNSSNSSGFSGNINNTQQLTKTGNHKIHTCHVCDAQFVRANHLTRHMTLHRAILIHKCDRCDKAYATLEHLGKHVEEDHINKPYECTICNKPFSRGEHLIRHLKIHQNNNNEKSDNLNCSICQKTFSRSDHLARHIKIHLLQDKRHVCNDCGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCTLCGKSFNKSNKLLRHTRVHTGERPYVCSICGRAFTQSNDLSLHMRRHTGARPYACGVCPARFIQSGQLKAHRRSTGHWMETQPELKGGHRVEPVTPVLDPAPIRFKTHGKQRKSNELDDDIDNCVDDEDRKNTKLLNQTMNIMSGINLQGQSIMMDASKLVELQNTGFINLINTTTAGTSGGNSVLKYKTIDNSDNTGQFNVCGQIIKTESNIVKPLDDVEKIPTTITNFPRDTATVTYSIVAPTTTFTTTDYSYQNYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00814559;
90% Identity: iTF_00814559;
80% Identity: -