Hcic008078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hycleus cichorii
Gene Symbol
ZNF236
Assembly
GCA_013841215.1
Location
JACDRQ010000046.1:18853-26895[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00036 0.024 14.6 2.6 1 23 115 137 115 137 0.98
2 25 0.0032 0.22 11.6 0.2 1 23 143 165 143 165 0.97
3 25 0.00013 0.009 16.0 0.2 2 23 171 192 171 192 0.97
4 25 0.0014 0.093 12.8 0.3 1 23 198 220 198 220 0.99
5 25 0.013 0.86 9.7 1.8 2 23 231 252 230 252 0.94
6 25 4.8e-05 0.0033 17.3 4.6 1 23 276 298 276 298 0.96
7 25 2.8e-05 0.0019 18.1 1.6 1 23 304 326 304 326 0.97
8 25 0.00026 0.017 15.1 0.6 1 23 332 355 332 355 0.96
9 25 0.00083 0.056 13.4 4.6 1 23 365 388 365 388 0.97
10 25 3.7e-07 2.5e-05 24.0 0.9 1 23 448 470 448 470 0.98
11 25 5.3e-05 0.0036 17.2 1.3 1 23 476 498 476 498 0.96
12 25 1.3e-05 0.00088 19.1 0.8 1 23 504 526 504 526 0.99
13 25 1.1 76 3.6 1.9 1 23 534 557 534 557 0.93
14 25 0.003 0.2 11.7 1.4 1 23 592 614 592 614 0.96
15 25 0.003 0.21 11.7 2.2 2 23 621 643 620 643 0.94
16 25 0.0022 0.15 12.1 3.1 1 20 648 667 648 669 0.93
17 25 0.00013 0.0085 16.0 2.8 1 23 674 696 674 696 0.99
18 25 0.00017 0.011 15.6 1.8 1 23 905 927 905 927 0.96
19 25 4e-08 2.7e-06 27.0 1.7 2 23 939 960 939 960 0.97
20 25 7.5e-07 5.1e-05 23.0 1.7 1 23 966 988 966 988 0.98
21 25 2.7e-05 0.0018 18.1 1.1 3 23 998 1018 997 1018 0.97
22 25 0.075 5.1 7.3 4.5 1 23 1024 1046 1024 1047 0.94
23 25 1.2e-05 0.00083 19.2 1.6 1 23 1198 1220 1198 1220 0.98
24 25 4.5e-05 0.0031 17.4 0.2 1 23 1226 1248 1226 1248 0.96
25 25 0.00066 0.045 13.8 3.0 1 23 1254 1277 1254 1277 0.97

Sequence Information

Coding Sequence
ATGGCCCAAGAAGACCCAATTACTGATAAATTATCAACATTGGTGACTTTACCGATACAAACCTACGATAATATCGTCCAATTACCGGATAATATACGTGTAGTTTCAGATGTTGTTATCAAACCGTTATCAGATAATTCTTTCTATATTGTCGATCCAAATGATACAACAGCCAATGGGAATTTTGTGGAGCTTTTAAATAATAATAACAACGATTTGATATTGTTAAATATACCAACAGATGAACCGATAAACAATCGAATCGAAGTAGATAATATTAAATCGACAGCGTTAGATGTAATTGTAGAGAAGACTAATGATAATACCAAACCGATTCCTATTTATCGTTGTACGAAATGTGATGAAGAATTCAAGAAATTTAATTTATACAAAAAGCATATAATGTGGCACAATAATATGAAGAAATTTAAATGTGATAAATGTTCGATTAGTTATAATATTGAAGAGAATTTAAATATACACACAGCTGTTCATGATGATGGTAAACCAACGTGTCCAATTTGTAAAATATCATTCCAAAGATTAGCTAGCTTAAAATCACATCTAATCGTCCACCAAGTCGAAGAATTGTACAAATGCGAAGAGTGTCTATCAGAATTCGAGCGAGAAGAGGAACTCAGTAAACATCTACAATCCCATTTGAGTACGCCTAAAGAAAAAGACGGAACTGTTTGTTCGTATTGTCGTGTAAAATTCACCGATTCCAACCAGTATAAAGAACACGTAGCCCATCATGTGAAAGTAAAAAAATTGATACTACCAGGCCGGCGGTCGCGAAGAAACCAAAATAATCGCATCTACACCCATTGTTGTAGTGTTTGCCAGAAATCGTTCTCAAAAGCGTCGTTATTGGAGCGCCATTCGCGTGTGCATAGCGGCGAAAAACCCTTTATCTGCCATTATTGTAATCGTGGTTTTAATCAAAAAGGCGCCTTACAGATCCATGTAACGAAACATACGGGTATTAAACCGTATCGTTGTACGTTATGTTCAGCTGAATTCTATCAAAAAGGCAATCTTCGCGTGCATGTTGAGAAGACACATACGGCGCCATTACCGGGTGTTCAAACTTATAAATGTTCGCATTGTCCGTGTATTTTTAAGAAAGTTTCAAGTTTGAATGTTCATATAACAAAGACGCATGCTAATTCAAATCAATCGAACAATTCCATTGATTTAACAAATAAATTGCAACTGATTGAAACAAGTAATGATAATAGTGACGATAATGTTAATTATATTCGGGTAGCCGAATCGTTTTCTGATGGTACAACACGTCGTTATTTGGTTAAACAGAAATGTGTCAACAATTCACGGATTTATATCTGTAATTATTGTTCGAAAGAATTTAAAAAACCGTCCGATCTAATAAGGCACACACGGGTACATACAAGGGAGCGGCCGTTTTTGTGCAAATACTGCAATATTGCATTTTCGTTAAAATCAACGCTATTGTCCCACTTGAAGACGCATTCAAATAAATGCCACTACTCGTGTCCGGTTTGTATGAAGAAATTCTCAACATCAAGAGCTTTAAATTTACATATAAAAACTCATCCGGATCGATTGACGCAACCTTTCAAATGTAATTCGTGCAATAAATGGTTTAGTTCCATACAAAAAATGTTGGTACACAAAGAGAAATATCATCGACAAGATGTAGAAACAGCTGTGGAACAGGCGAAAATTGATGATAATTTGAATGTAGAACCAACTGAATTACAAACAACTTCGTTATTAAACGATGAACAGTACGAATGTCAAATTTGTAAACAAGAATTTGTTAAATTGTGCGATTTGAAACAGCACGCGACTATCCATTCGAACGATAAGAATTGTAAATGTGACGAATGCCAAAAATTATTTTCAACGATAGATGCCCTAAAAGAGCATAAATCAATGTATCACAATCTAAAATCGTATAATTGTTGCGATTGTAGTAGGAAATTTACGAGTTTATCGCTTTTAAAACAACATAAATTAAGTCCAACTCTACCGTACAAATGTTCATATTGTGATCGAGCTTTCTGTTCGATATTACTGTATCGGCGCCATATTATTACGCATAAAAATAACGGAGATTTTGAGGAGAACCAAACGAATTTGACCACTATAGATCCGGATAGTATGATAAATTCCGATAATTTATCAATTAATCATAGTTGCAATGAATTAAATCGCAAATACGAAGAGGATATCCAACAAGAGGAAAATTCAGCGTTAGATCAACAATTATACCAATTGATACCGAGTCAGATTCAAATTACCGCAAATAATAGTAACGATGATAATAATAAAGGAAAAGATCAAGTCCAGATTCTTATAAATTGTGATGATCTACAGTTCAGTGATAATGGGAATTTGTACGCGAAGAATGACGAGGGCACGGATTCGGTGTTTTTCAACCAATTGGACTTCCACGACGGTAACGTTTTCAATATCGACAATTTGAACAACGAATTCGAACAAATTTTAAACCCCATCATTGATAACAACAATAAAACCGAACAAATAAATGAGAATTTATTGAATAAATCGGTTGAAAATTTCTCAACTACAGTAACCAACGTTATCGTAGATCCAACATCTTTGACGATTTTTAATAACAACAACAATTTAGAATCGGATGATTTAAATAAAGATATAAAATTAGACAATGAGAAAGCCGACAAAAATAAGAATAAACGAAAATATATTTGCCCGTATTGTAAACGAACATTAACAAACAAATCGACATATTCGAAACATTTAGATAATCACATAAAACGCAATAAAAACGAACCAGTATTGCGCGTATGCAACTATTGCAATAAATCATTCAAGAAACAATCAGATTTAGTGCGACATATACGTACGCATACAGGAGAACGTCCGTTCGCTTGCGATAAATGCGATAAGAGTTTCTCATTAAAATCAACACTACTATCCCATCAACGTACACACAATCCAATCAATTCGAAGAAAATCCTGTGTACTATATGCAATTCATCGTTTACATCGAAATCGAGCCTACGAGTCCATATGAGCTTGCATACCGGCATTAAAGCTTACGATTGTGTGTATTGTCCGATGAAATTTCGTACGTTATCGCACAAAAAATATCACGAAGCCTCACATCATTACAGTGTTAATAATGAAGAAGAATTATTGAGATTCAAAGGTGTCGATGGAGATTTTGGTAATTTAATCAATGACGACCAATCGGGTGCGGTAACAACAACCGAACAACAATTGAATGAGAGCAATGATAATATTCTAGTAGTACAAGAATCATTACAACTACCGATATTGATAAATGACGATAATTTAATGAATGAAACTGTGCAATTGGAACCAAATATTCTGCAACAATGGTCGAATAATTTGCTGTTACAAGACACATTATTACAACCGTCATCTTTAATACAGTTAGACGATGGTACTTTATTGAATATCAAAACAATAAATAATGATATTGATTTGGTAACTAATCAGAATATTGTCGAAACTCAGTTGATTAATCAACAAGAACCGGCAGCGGTACAGCCTCAACAACCACAAATTGATACAGTTAATGGTAAACCGAGGACGTTCAAATGTGATATTTGTAATAAAATGTACGCTTCGAAAGATGTGTTGAGGCGGCATCGGAAAAATCATGGTATTAACAAGAAATTCCCGTGTAATAATTGTGATAAAGGTTTCGATACAGAGGATGCTTTAGAGAAACACAGTAAACTCCATTCTGGATATCGGCCGTTTACTTGTATGCATTGTAATAATAGTTTTTCGAAACAACAGAGTCTTTCAGCACATGTGAAAAGGATACATAAAGTGCCCAATAATTCATGGAAAAACGATGTTGTTTTCACGTTTTCAACTTAG
Protein Sequence
MAQEDPITDKLSTLVTLPIQTYDNIVQLPDNIRVVSDVVIKPLSDNSFYIVDPNDTTANGNFVELLNNNNNDLILLNIPTDEPINNRIEVDNIKSTALDVIVEKTNDNTKPIPIYRCTKCDEEFKKFNLYKKHIMWHNNMKKFKCDKCSISYNIEENLNIHTAVHDDGKPTCPICKISFQRLASLKSHLIVHQVEELYKCEECLSEFEREEELSKHLQSHLSTPKEKDGTVCSYCRVKFTDSNQYKEHVAHHVKVKKLILPGRRSRRNQNNRIYTHCCSVCQKSFSKASLLERHSRVHSGEKPFICHYCNRGFNQKGALQIHVTKHTGIKPYRCTLCSAEFYQKGNLRVHVEKTHTAPLPGVQTYKCSHCPCIFKKVSSLNVHITKTHANSNQSNNSIDLTNKLQLIETSNDNSDDNVNYIRVAESFSDGTTRRYLVKQKCVNNSRIYICNYCSKEFKKPSDLIRHTRVHTRERPFLCKYCNIAFSLKSTLLSHLKTHSNKCHYSCPVCMKKFSTSRALNLHIKTHPDRLTQPFKCNSCNKWFSSIQKMLVHKEKYHRQDVETAVEQAKIDDNLNVEPTELQTTSLLNDEQYECQICKQEFVKLCDLKQHATIHSNDKNCKCDECQKLFSTIDALKEHKSMYHNLKSYNCCDCSRKFTSLSLLKQHKLSPTLPYKCSYCDRAFCSILLYRRHIITHKNNGDFEENQTNLTTIDPDSMINSDNLSINHSCNELNRKYEEDIQQEENSALDQQLYQLIPSQIQITANNSNDDNNKGKDQVQILINCDDLQFSDNGNLYAKNDEGTDSVFFNQLDFHDGNVFNIDNLNNEFEQILNPIIDNNNKTEQINENLLNKSVENFSTTVTNVIVDPTSLTIFNNNNNLESDDLNKDIKLDNEKADKNKNKRKYICPYCKRTLTNKSTYSKHLDNHIKRNKNEPVLRVCNYCNKSFKKQSDLVRHIRTHTGERPFACDKCDKSFSLKSTLLSHQRTHNPINSKKILCTICNSSFTSKSSLRVHMSLHTGIKAYDCVYCPMKFRTLSHKKYHEASHHYSVNNEEELLRFKGVDGDFGNLINDDQSGAVTTTEQQLNESNDNILVVQESLQLPILINDDNLMNETVQLEPNILQQWSNNLLLQDTLLQPSSLIQLDDGTLLNIKTINNDIDLVTNQNIVETQLINQQEPAAVQPQQPQIDTVNGKPRTFKCDICNKMYASKDVLRRHRKNHGINKKFPCNNCDKGFDTEDALEKHSKLHSGYRPFTCMHCNNSFSKQQSLSAHVKRIHKVPNNSWKNDVVFTFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00814556;
90% Identity
iTF_00814556;
80% Identity
-