Hcul017676.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:47943012-47944421[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-96 5.1e-92 309.0 32.5 1 299 31 335 31 336 0.89 2 2 0.024 3.2e+02 1.0 3.8 211 247 356 391 338 410 0.58
Sequence Information
- Coding Sequence
- ATGGATAGTCCTGATGCAGTTGGACGGCGACGTAATCAAACAACAAGAATCAATGCTGAGGATCAAACTTTGGATCTACTGGCACGGGAGGCTGAAGCTAAATTGGCCGCCAGACGTCAAGCAAGAGCTGAAGCACGCGAAATTAGAATGAAAGAACTGGAACGTCAAGAAACGGAGAGACAACATAATGCCGATCGTGCATTTGATATGCAAAACTCCGACACAATAACAAGTCGGCGGGTAGTTGGACAAAATAATCGGTTGGTGAATTCATCAATGTCGCCTCGAAGGAGCAGTGAAGACTCACTTGAAGACTGTGACGGCAGTATTGGAAACTGTAATAATGGTGGTAATACTGGAAAGAGTTTAAGAGATTTGAAACTGGAACTTAAGgATGTCGAAGAACGTTTTCGTAAAGCAATGATATCAAATGCTCAGCTTGACAATTTAAGAGCATCCCATTCATATCAAATACAATTGCTTCAAGATAAAATCGAAgaaatcgaagaaaattattCCCAGCTTCAACGTGAATATAAAGAAAAGACAAAAGATAATAATGCTCTGAAGAGACAAATCGAAAAATTAGAAGAAGAACTTAAATTAATTCGCGGTCAACTAGAAGAACGTGATTTGCTTATCCAAGAACAGGGTTTAACAATAGTTCTTCTTGAAAATGAAGATGGTACTGATGCTAGACGAGCTTTAGTCAGTGTTGAAAATGCACAATTATTAGGTTCTGTTCAAGGTTCATTAGATGTTCGATTAAGAAAATTTACGGAAGAAAAACAATTGCTACAAAATGAAGTACAGCAACTTCAACAACAATTAGATGAATTAAAAACTCAGGGAGGCAGAAGGCGTGGAAGTAGTCGTTTAGGAGGCGGTGGTGGTAGCAGTGGTATTGATAGTGGAATGGATGATGAATATGACTTGCAACGTGaagcaaataaattaatatcagaatataaatataaattacaaaaatctgaaaaagaAATTGCTAGTCTTCAAGCTAGTTTGGCTAGATCTGAGACACAAGTTATACGATATAAATCTACAGCTGAAGCAGCTGAAAAGGCTGAATCTGATTTAAAGCTAGAGCGAAGAAAGTTACAGAGAGAGAATCGTGAATTATCAGAAAAGCTTGAAGAATTGGAAACTTCTCATAATCATTTGTTGAAACGTTTTGACAAATTGAAGAATGCAAAAAGTACTTTACTAAAAGAAGTATGA
- Protein Sequence
- MDSPDAVGRRRNQTTRINAEDQTLDLLAREAEAKLAARRQARAEAREIRMKELERQETERQHNADRAFDMQNSDTITSRRVVGQNNRLVNSSMSPRRSSEDSLEDCDGSIGNCNNGGNTGKSLRDLKLELKDVEERFRKAMISNAQLDNLRASHSYQIQLLQDKIEEIEENYSQLQREYKEKTKDNNALKRQIEKLEEELKLIRGQLEERDLLIQEQGLTIVLLENEDGTDARRALVSVENAQLLGSVQGSLDVRLRKFTEEKQLLQNEVQQLQQQLDELKTQGGRRRGSSRLGGGGGSSGIDSGMDDEYDLQREANKLISEYKYKLQKSEKEIASLQASLARSETQVIRYKSTAEAAEKAESDLKLERRKLQRENRELSEKLEELETSHNHLLKRFDKLKNAKSTLLKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -