Basic Information

Insect: Horisme vitalbata
Gene Symbol: -
Assembly: GCA_951804965.1
Location: OX638109.1:8868351-8870060[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 2.6 9.1 0.0 19 46 147 174 139 180 0.84

2 11 0.021 1.8e+02 3.2 0.1 21 47 177 203 174 208 0.83

3 11 0.02 1.7e+02 3.3 0.1 21 45 205 229 200 236 0.84

4 11 0.027 2.2e+02 2.9 0.0 21 51 233 263 229 266 0.81

5 11 0.26 2.1e+03 -0.2 0.0 26 48 294 316 288 320 0.80

6 11 2.4e-05 0.2 12.7 0.1 21 51 317 347 314 349 0.87

7 11 0.056 4.7e+02 1.9 0.0 21 45 345 369 343 373 0.90

8 11 0.02 1.7e+02 3.3 0.1 14 48 365 399 360 404 0.71

9 11 0.2 1.7e+03 0.1 0.1 19 48 399 428 390 434 0.79

10 11 0.23 1.9e+03 -0.1 0.1 21 47 429 455 421 460 0.83

11 11 0.022 1.8e+02 3.2 0.3 21 44 457 480 451 486 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	2.6	9.1	0.0	19	46	147	174	139	180	0.84
2	11	0.021	1.8e+02	3.2	0.1	21	47	177	203	174	208	0.83
3	11	0.02	1.7e+02	3.3	0.1	21	45	205	229	200	236	0.84
4	11	0.027	2.2e+02	2.9	0.0	21	51	233	263	229	266	0.81
5	11	0.26	2.1e+03	-0.2	0.0	26	48	294	316	288	320	0.80
6	11	2.4e-05	0.2	12.7	0.1	21	51	317	347	314	349	0.87
7	11	0.056	4.7e+02	1.9	0.0	21	45	345	369	343	373	0.90
8	11	0.02	1.7e+02	3.3	0.1	14	48	365	399	360	404	0.71
9	11	0.2	1.7e+03	0.1	0.1	19	48	399	428	390	434	0.79
10	11	0.23	1.9e+03	-0.1	0.1	21	47	429	455	421	460	0.83
11	11	0.022	1.8e+02	3.2	0.3	21	44	457	480	451	486	0.88

Sequence Information

Coding Sequence: ATGGCACTAAACTTGTCAATCTCAGCTGAGGAGGAGGTTAAAGTCAAAATAGAAGAGATAAAAGTGGAATGTGAACCTTTCGATACAAGCTTACAACAAGAGTTCCCTCCAGCTACCAGCAGAATTGACACCGTACAGGTGAAAGCAGAACCAGTCGATAAAGATGACATAAAGACAGAAACAGAGACCGTGATAGTAACCATAAAGCAGGAGCCAGATGACGAACCCAGCGGAGAAACAGAGCAATACTTTTTGGAAATTGAACCGATCGAGGAAACTGATCCATGCAGAGATAACGAAGTCACTGTCAAAGCCGAACGGACAACAGAACTAGCCAACGCAAACATAGTTGATGACGctgatttatttaagtaccgTTGCGACGTTTGCAACCTTAAATTTGTACTGGAATCTGATTTTGAGAAACATTCTAAGTTCCATTCGTCAGAGAAACAGTTTGCATGTGAGATGTGTTATAAGAAGTTTGCACAAAAGAGCGACATGAAGAGGCATATGAAGGTGCACACCGGAGAGAGACCTTACACATGCACCGTCTGCGAGAAGAAATTCTCCGCAGCGAGCACTCTGAAGCTGCATCTACGGGTACACTCCGGGGAGAAACCCTTCCCTTGCAGCATCTGTACCAAACCATTCAAAGACTCCTGCGCTTTAAAAGTTCACATGCGAACTCACACCGGAGAAAAACCATTTGCTTGTCACATCTGTGATATGACGTACACACGAAAAGACAGTCTGTTAAAGCATCTCCGTGTACACACAGGGGATAAGCCATTCGCCTGCAATCGATGCCACAAAAAGTTTGTAACGCAAGAAGATTTGAAGCAACACTATCCGTTCCATGGCAGCAAAAAGATGCATCCTTGCAGCATTTGCAATCACAACTTCGCAGGCGCTTACAATCTAAAAGTTCATATGAAGGTTCACACAGGCGAAAAGCCATATACATGTGAAGTTTGCAATAAGTCATATGCACAATCCTTTAATTTGAAACAACATATGCGCGTTCATACTGGAGAAAAACCCTATGCTTGCAAACTGTGTGACAAAACCTTCTCCGAAGGTGGCACACTGAAGAGACATATAAGAGTTCACACCGGAGAAAGACCGTACACTTGCAAAGTCTGCAGTAAAAGCTTCAACGATTTAAGCACAATTAAAAACCACATGTTAAGACACACAGGACAGAAGCCGTACTCCTGTCACGTTTGCAACCGCTCGTTTATACAGAAAGGTGATTACAATAAGCATATGAGAATTCATACGGGGGAAAAACCTTATGCTTGTAAGAATTGCACTAAATCATTCACTCGCAGCGAACACCTGATACATCATATGAGAATCCATACGGGAGAGAAACCATACGCCTGTTCTCTCTGCGATTACAAATGTCCCCAGAAAAGCAATCTTAAATCTCACATTATTCGAATGCATCCCGGTGAAAAGGAACAATTACTCAAAGTTCTTAATTCAAGGACTGACGCGCAAAGTTTAGATAGTAAAGATGCTAGTGATGTGAATAGTGTTAGTCAAACTGAAAATTCAAAATCTGTGGTTAGTGTTGGGACTGAGGATTTTAGTGATGTTAATAGTGTAAAAACTGAGGAACATAGCACTGATGTGCTTATTGTTGTGAAAACTGAGGATTGTAGTGTTGATCCACTTATTACTGTTAAAACTGAGGATACCTAA
Protein Sequence: MALNLSISAEEEVKVKIEEIKVECEPFDTSLQQEFPPATSRIDTVQVKAEPVDKDDIKTETETVIVTIKQEPDDEPSGETEQYFLEIEPIEETDPCRDNEVTVKAERTTELANANIVDDADLFKYRCDVCNLKFVLESDFEKHSKFHSSEKQFACEMCYKKFAQKSDMKRHMKVHTGERPYTCTVCEKKFSAASTLKLHLRVHSGEKPFPCSICTKPFKDSCALKVHMRTHTGEKPFACHICDMTYTRKDSLLKHLRVHTGDKPFACNRCHKKFVTQEDLKQHYPFHGSKKMHPCSICNHNFAGAYNLKVHMKVHTGEKPYTCEVCNKSYAQSFNLKQHMRVHTGEKPYACKLCDKTFSEGGTLKRHIRVHTGERPYTCKVCSKSFNDLSTIKNHMLRHTGQKPYSCHVCNRSFIQKGDYNKHMRIHTGEKPYACKNCTKSFTRSEHLIHHMRIHTGEKPYACSLCDYKCPQKSNLKSHIIRMHPGEKEQLLKVLNSRTDAQSLDSKDASDVNSVSQTENSKSVVSVGTEDFSDVNSVKTEEHSTDVLIVVKTEDCSVDPLITVKTEDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811244;
90% Identity: iTF_00811244;
80% Identity: iTF_00811244;