Hvit002108.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- -
- Assembly
- GCA_951804965.1
- Location
- OX638088.1:35050516-35052419[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.02 1.7e+02 3.3 0.1 21 47 129 155 112 160 0.78 2 11 4.8e-05 0.4 11.7 0.1 22 48 158 184 155 189 0.85 3 11 0.73 6.1e+03 -1.7 0.0 22 31 214 223 209 238 0.76 4 11 0.39 3.2e+03 -0.8 0.1 22 47 270 295 267 300 0.81 5 11 0.0026 22 6.2 0.0 21 49 297 325 292 328 0.87 6 11 0.00071 5.9 8.0 0.0 21 48 325 352 321 356 0.87 7 11 4.1e-05 0.34 11.9 0.2 21 52 353 384 350 385 0.89 8 11 0.00017 1.4 9.9 0.4 21 52 381 412 378 414 0.89 9 11 0.018 1.5e+02 3.5 0.1 22 52 410 440 407 441 0.88 10 11 0.025 2.1e+02 3.0 0.2 21 45 437 461 435 469 0.70 11 11 0.03 2.5e+02 2.8 0.1 23 48 467 492 456 497 0.84
Sequence Information
- Coding Sequence
- ATGTGTCGGAAATCTGATAAAATCTGTAGGGATCTCTTCCACACTCACCATAAggtGTCGCAGGAAATTCTTACAGAGCATAACCTAGGGTGGATATACAATCTGTCAATAACTGAACTGGAATCTATATCAATATCTGATGATGACAGCCATCAAATAGTAACTGTAAAAGAAGAAGATGATGCAGATCAAGATATATTCTCAGAAATAGACTCTGAAACATTAGTTGACGATGCAAAGTGTAAAGACTCACTGTATATACCAGCAGAGAAAGTGAAAGATATTGTTGCTGGCACTGCAATCGTGGCTAACATTTCCGAGGGTGATATTAAAAAAAgacctaataaaataaagtcagtGAAAAACAATAGGAGTTTTGAAATTGGACAAAAGTCATACAAATGCAAAGTATGCAGTAAAATTTTCAGCCAGAAAAATTCCTTAAGAGTGCATATGATAATTCATTCTGGACATAAGCCATATACATGTGACATATGCAATAAGTCATTCACTCAAAGCAGTACTTTGAAAAGGCACAGGCAGGTTCACACAGGAGAAAAACCATTTCCTTGCACTAGATGTGACCGCTCATTCAGAAGGAAATTTATACTAGATGTTCACATGAGAACACACACCGGAGAAGATGGGTATACCTGTAATATTTGTAGTAAGAATTGCACCACAAAAGGAGGTTTTATAAGACACATGGTAATACATACTGGTGAGAAAGCATATATCTGCGATTTATGCAAAAAACCATTTGCAGGAAAGAATGATCTATTAAAACACATGATAACTCACACTAAAGAGAAGCCTTATATCTGTAGTGCTTGTGGTAAATCATGTAAAACTAAGCAACAGCTGAAAATTCACATGCGAATACACACCGGGGAGAAGCCGTATACATGTAACCTCTGTAACAGATCATTTAGCCAAACTGGTGCATTGAAAGGACACATGAAAATACATACAGGAGAGAAGCCACATGCATGTAACATATGCCATAAACAATTCAGTCAGAGTGGTTCAGTGAAGAGTCATATGAAGGTACACACCGGTGAGAAGCCACATGCCTGTACCATATGCCAGAAACCGTTCAGCCTGAGCAGTGCTCTGCGGAGGCACCTCAAGATTCACACGGGAGAGAAGCCATACTCCTGCACCGTATGCAACAAACACTTCATCGAGAGCTGTGAACTGAGGCGCCACATGAACATACACACCGAGGATAAACCACATTCCTGCTACACATGCAATAAATCATTCCGGGACAAGAAGTCTCTGAAAATCCACATGAGATTGCACACTGGGGAAAAGCCTTACACTTGTAATATATGCGGTAAATCATACACTCTTAATAGTATTTTGACGAAGCACATGAGAATTCACACTGAAGGAAAGCCATACACCTGCAATGTATGTGGAAGGTCATTTACTCAGAATAGTAGTCTGACAACACATATTAAAAGAATTCACACAGAAGAGAAGCCTAAATAA
- Protein Sequence
- MCRKSDKICRDLFHTHHKVSQEILTEHNLGWIYNLSITELESISISDDDSHQIVTVKEEDDADQDIFSEIDSETLVDDAKCKDSLYIPAEKVKDIVAGTAIVANISEGDIKKRPNKIKSVKNNRSFEIGQKSYKCKVCSKIFSQKNSLRVHMIIHSGHKPYTCDICNKSFTQSSTLKRHRQVHTGEKPFPCTRCDRSFRRKFILDVHMRTHTGEDGYTCNICSKNCTTKGGFIRHMVIHTGEKAYICDLCKKPFAGKNDLLKHMITHTKEKPYICSACGKSCKTKQQLKIHMRIHTGEKPYTCNLCNRSFSQTGALKGHMKIHTGEKPHACNICHKQFSQSGSVKSHMKVHTGEKPHACTICQKPFSLSSALRRHLKIHTGEKPYSCTVCNKHFIESCELRRHMNIHTEDKPHSCYTCNKSFRDKKSLKIHMRLHTGEKPYTCNICGKSYTLNSILTKHMRIHTEGKPYTCNVCGRSFTQNSSLTTHIKRIHTEEKPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811238;
- 90% Identity
- iTF_00811238;
- 80% Identity
- iTF_00811238;