Hbla022326.1
Basic Information
- Insect
- Hoplodrina blanda
- Gene Symbol
- -
- Assembly
- GCA_949316365.1
- Location
- OX438593.1:2049949-2058955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0096 0.67 11.1 7.0 1 23 271 293 271 293 0.97 2 12 9.6e-06 0.00067 20.5 1.9 2 23 301 322 300 322 0.95 3 12 0.082 5.7 8.2 0.3 1 23 326 348 326 348 0.97 4 12 0.00052 0.036 15.1 3.0 1 23 353 376 353 376 0.97 5 12 0.0016 0.11 13.5 0.2 3 23 382 403 381 403 0.96 6 12 0.0058 0.4 11.8 0.2 2 20 419 437 419 443 0.93 7 12 0.0011 0.076 14.1 0.1 3 23 453 474 453 474 0.95 8 12 0.0016 0.11 13.6 1.2 2 23 497 519 497 519 0.96 9 12 0.033 2.3 9.4 2.3 2 23 532 553 531 553 0.96 10 12 4.7e-05 0.0032 18.4 4.9 1 23 559 581 559 581 0.99 11 12 2.6e-06 0.00018 22.3 0.3 1 23 587 609 587 609 0.98 12 12 0.00085 0.059 14.4 0.9 1 23 615 638 615 638 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTTCAAGTATGTcgtatttgtttaaatacggACGTAAAAATGCACGACCTGTTGGCATACCCTTTAGAATCTTATTTTGCATCGTTCATGATCGAAAGTAAGcctCTATATACCAACTTGCCGACATATGCATGCTACGAGTGTGCAGCACTAGTGAAGAAGTTTCATTTATTTAGAGAGAAGTGTCTGCGGAGCCAGGGACTTCTGTGTGCAATAATTGATGATTGTGgaaagTTATCATGTCCAGCGATAAAATCAATAAGCAGAAAAAATCTTCTCGTAATTACAAACGTCACTCATATCAGCATAGAAGAAGATAGCAGAACAAATGACATCAACATAGAAAGACCCGCATTCATCGTAGAAGTTATCAAGAAAGAGGATCATGATGACTTTGATGTACCGGACCACATCAGTCCCGATAACAGTTCaagtgatgatgatgaatgtaaCAAGAATGATAAGAAGGAAATTCATGATGTGGAGAAGGTGGAGATTTCTGTGAAGATGGACATTCAAGAAGAGTCCGATGGCCCTGAgCTTTCTGAACCAATAGTTGAGTCGCAACAAAAATtgccattaaaaaaatcaaacagaCCAACAGCCCAGCCCAGGAAACGAATAAGATCAAAGAGGACTCGTAGTACGGTTGCAAAGAAGAATCCAAAGAAAGTTAGAGACAATGACAAACCATGTGATGATAAGACTGATGATTTAATCAATGTTATTAATTTGTCGATCGAAGATCAGTTTGAAGAGGTAAACAAGCGCAAGCAGTCTTCCAACTACCTCAACTGTCCGTACCAGTGCCACTTGTGCTACAGGGGGTTCAACAACGCGCATGCCTGGAAACATCACCAAACCAAACACTCTCCGAACCTGGGCGACATAGAGTGCAAAATATGCAAGTACAGATTCAAAACGAAACGCAATCTTCAGAGACATGCCCTAAACCACGGGAAGAGATATGTTTGCAATTTATGTCCATATAACTCTAGTAATATAACTACTGTTAAGCAGCATCAAGGGTCACATAAGGGAGTCACACATAAATGCAAGTTTTGTGATGAAGTTTTCAATGTAAGAACGACATATGTTAGTCACATGCGTATCAAACATCCATCAGAAAATATCTGCGGGTTCTGTGGCTACTCATTCTACAGCAAGCAGGGCCTCGTCGTACATAAGAATATGATGCACAAGGATCTACAAACAAAACAAGAAGACAACACAGAAGAAGGTCCATATTGCGAAGAGTGTGACGTCAAGTTCATATCGACGGAGGCGTACAAGAGACACATGGTGATGTCCGTCAAGCACACCCGGAGTACAGACTCTATTAACGGGTGTCGTGTTTGTGGCGAGACGTTCGACGACCCTGAAGAGCTGCGTCTCCATAATCGTGAGGAGCATCCCAAGAAACAACCGAAGCACTACAATTACAAACGGAAAGGTCAAGTTCGAACCAAATGGCCTGCCAAGTGTGAACATTGTCCAGAAGAATTTGCGACTCCGCGTTCATACTGGAACCATTTCCGTCTCAAGCATCCTGATAAGTACGAGCCAGCGGTGCGGAAGAATTGCGTGTGCGATATATGCGGCAAGAGATACGCGTGCAACGCCGTCCTAGAAATGCACAAACGCACCCACTTCGACGAGCGTCCATACAAATGTTCCCAATGCGACAAGGCTTGCCACACTGCACAGAACCTTCGCGTGCACATGCAGAAACATTCCAACACCCGCCCCTTCCCGTGCAGCGTGTGTTCCCAAGCTTTCAAGAGGAAAGAAGCGCTGGAAAGGCATTTGAAAATCCACTCCGGCGATAACCCGTATAAGTGTGAAATTTGCGGCGTAGCTTTCGCAAAGTCTTGTACGAGAACGCTTCACGTGCGCACCGTACATACTAAGGAACCCCCACCGCCGCGCAAACGACGAAACAAACTCACCAAGTAA
- Protein Sequence
- MEDVQVCRICLNTDVKMHDLLAYPLESYFASFMIESKPLYTNLPTYACYECAALVKKFHLFREKCLRSQGLLCAIIDDCGKLSCPAIKSISRKNLLVITNVTHISIEEDSRTNDINIERPAFIVEVIKKEDHDDFDVPDHISPDNSSSDDDECNKNDKKEIHDVEKVEISVKMDIQEESDGPELSEPIVESQQKLPLKKSNRPTAQPRKRIRSKRTRSTVAKKNPKKVRDNDKPCDDKTDDLINVINLSIEDQFEEVNKRKQSSNYLNCPYQCHLCYRGFNNAHAWKHHQTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDLQTKQEDNTEEGPYCEECDVKFISTEAYKRHMVMSVKHTRSTDSINGCRVCGETFDDPEELRLHNREEHPKKQPKHYNYKRKGQVRTKWPAKCEHCPEEFATPRSYWNHFRLKHPDKYEPAVRKNCVCDICGKRYACNAVLEMHKRTHFDERPYKCSQCDKACHTAQNLRVHMQKHSNTRPFPCSVCSQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906431;
- 90% Identity
- iTF_00273848;
- 80% Identity
- -