Hbla001638.1
Basic Information
- Insect
- Hoplodrina blanda
- Gene Symbol
- -
- Assembly
- GCA_949316365.1
- Location
- OX438565.1:435120-437365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 11 7.2 0.5 2 23 36 56 36 56 0.95 2 13 3.7e-05 0.0026 18.7 0.7 1 23 62 85 62 85 0.94 3 13 3.3e-06 0.00023 22.0 1.9 1 23 91 113 91 113 0.96 4 13 0.00028 0.019 15.9 0.0 1 23 119 141 119 141 0.98 5 13 0.00012 0.0082 17.1 0.1 1 23 146 168 146 168 0.97 6 13 0.00038 0.026 15.5 4.1 5 23 177 195 174 195 0.96 7 13 3.4 2.4e+02 3.1 1.7 1 23 256 277 256 277 0.89 8 13 0.025 1.8 9.8 0.7 3 23 472 493 471 493 0.95 9 13 0.00064 0.044 14.8 2.7 1 23 499 521 499 521 0.96 10 13 2.8e-05 0.002 19.0 1.8 1 23 527 549 527 549 0.98 11 13 0.004 0.28 12.3 7.1 2 23 556 577 555 577 0.97 12 13 9.3e-05 0.0065 17.4 3.1 1 23 583 605 583 605 0.98 13 13 0.0002 0.014 16.4 0.7 2 23 611 633 610 633 0.95
Sequence Information
- Coding Sequence
- ATGCCAGAAGAAGAAAGCGATACCCAAGAAAATGATAAAACGAAAATCAAGGAGGTTATCGAAAAACCGGAGTTTACAATGAGTGAAAATGGGAAGCGATACGCGAAATGTGGCGTGTGTAACAAGAGCGTGTCGCACGGCGGCTGGACGCGCCACGTGCGCGCGCACCGCGGGGAGCGGCGCCACAGCTGCCACGCGTGCGGCCTGGCCTTCAACGACAGCGGCAACCTGCAGCGGCACGCGCGCGCCATACACCAGCGCCAGCGGCCCTTCGCCTGCCGCGCCTGCCCGAAAACATTCTCTCGAAAGAGCCACTTAGAAGATCATATAAAGTCTCATTCGGATAGCCGAACATTTGTGTGTGACATATGTGGTAAGGGGTCCAAATCAGGCGCAGCATTACGAATGCACGCGCGCACGCACGACGCGTGCAAGTTTCCGTGCGTGCAGTGCGGCGCGCGGTTCAAGCGGCGCGGCGAGCTGAGCGCGCACGTGTCCGTGCACACCGGGGAGAAGGCACACGTCTGCCACTGCGGGAAGAGCTTCCGACTGCGAAGCCAGCTCACTGCACATACTAGAGTACATCAAAAAACACGGATAGAGGAAATGGAAGATCTAAGCAATGCTGATGCAATAAGGTTCACTTCCATGCCTATGTATGGGCCCGCACAGCCCCAGCACTACCGCGCCTGCACCTACTGCGTCAGCTCGCACCCGGTGTCCGGCTACAAGGAGCACCTCGTCACGGCGCACTCCGACCTGCTGTTCCACTGCGAGGAGTGCAACGCATACATCGACAAGAAAGACTTCTTCATTCACATGTCGCTCCACGCCTTACAATACACGACACAGgagactaaaaaaaagaaaattaagaaaaaggAAGACGTTAGTTGCAAGGAAGAAGTTCACAACCCCAGCCCGGTGCCTCCTGAAAACCGACCTCTTCTCACGAAAACCAACGATATAAAACCCGCagtggttaaaaccaaaacgaGTGTTGAAGATAATGAGTTCTCTGACCACAGCGATATGGAAGGCTTCGGGCCTCTACCCGAGTCACTGTTCGAAGCTATAGAGGACTCGCAGGACAGCCAACATCTAGAATACGACACGAGCCACGCCACGCCCGAGAATGAGCGCTGCAGCGACGAATCCAACAAATGTCCCgaacctaaaaataataatttaaataatcctGCGGTAAATACTAAGCTTAATAATTGTTCAGTAGTCATAGAATCCATGGATCTAAATAACTGTTCCCAAATTAATATTGcaattaaaaatgataaaattaacAACAATCTTGCTGTACTACCAGCAAATAACACTGCCCCAAACTCTACTGACGTTAGTGATAATGACGCGACTCACGAAAGGGCCAAGAAGAACCACAAGAAGACACGCAATTGTCCCTTCTGTCCGAAACAATACACGGCATCTTCCAGCTACTACTATCACTTGAAATACTTCCACAAAGGCAGCAAGGCGCACGCGTGCCAAGTGTGCGCCAAGAAGTTCGGCACCAGGTCGTGCCTGACGCAGCACATGGCCATACACACCGGACACCACGAGTTCAAATGCACAGAGTGCAAAAAACAGTTCAAATCCAAAGCAAGCCTCTACATTCACGAGCAGATCCACAATGGAAAGAAGTCGTGGTCTTGTAGCCAGTGCCACACGTCGTTCAGGTGGAAGACTCATCTGTTCAGACACATGAAGCGGCATACCGCCGAGAAAAGCCATGTCTGTACTACGTGTGGGCGCGGCTTCAGTGTCCGGTGCGATCTCCTGAGGCATGCGCGCACGCACGCCGCAGAGAGCATCACCTGCGATAAATGTGGCCAGAAATTCGCTCAACTACGATATTTAAAAGTGCACACAATTAAACAGCATTCGAACGGTATTAGGAAGGTATCTTAA
- Protein Sequence
- MPEEESDTQENDKTKIKEVIEKPEFTMSENGKRYAKCGVCNKSVSHGGWTRHVRAHRGERRHSCHACGLAFNDSGNLQRHARAIHQRQRPFACRACPKTFSRKSHLEDHIKSHSDSRTFVCDICGKGSKSGAALRMHARTHDACKFPCVQCGARFKRRGELSAHVSVHTGEKAHVCHCGKSFRLRSQLTAHTRVHQKTRIEEMEDLSNADAIRFTSMPMYGPAQPQHYRACTYCVSSHPVSGYKEHLVTAHSDLLFHCEECNAYIDKKDFFIHMSLHALQYTTQETKKKKIKKKEDVSCKEEVHNPSPVPPENRPLLTKTNDIKPAVVKTKTSVEDNEFSDHSDMEGFGPLPESLFEAIEDSQDSQHLEYDTSHATPENERCSDESNKCPEPKNNNLNNPAVNTKLNNCSVVIESMDLNNCSQINIAIKNDKINNNLAVLPANNTAPNSTDVSDNDATHERAKKNHKKTRNCPFCPKQYTASSSYYYHLKYFHKGSKAHACQVCAKKFGTRSCLTQHMAIHTGHHEFKCTECKKQFKSKASLYIHEQIHNGKKSWSCSQCHTSFRWKTHLFRHMKRHTAEKSHVCTTCGRGFSVRCDLLRHARTHAAESITCDKCGQKFAQLRYLKVHTIKQHSNGIRKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809408;
- 90% Identity
- iTF_00809408;
- 80% Identity
- -