Hamb018672.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458982.1:12539337-12541587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.3 22 6.3 0.5 2 23 36 56 36 56 0.94 2 13 0.00025 0.019 16.0 0.7 1 23 62 85 62 85 0.94 3 13 7.5e-07 5.5e-05 24.0 2.2 1 23 91 113 91 113 0.97 4 13 1.6e-05 0.0012 19.8 0.1 1 23 119 141 119 141 0.98 5 13 0.00012 0.0085 17.1 0.1 1 23 146 168 146 168 0.97 6 13 0.00037 0.027 15.5 4.1 5 23 177 195 174 195 0.96 7 13 3 2.2e+02 3.2 1.9 1 23 256 277 256 277 0.81 8 13 0.025 1.8 9.7 0.7 3 23 474 495 473 495 0.95 9 13 0.00033 0.024 15.7 2.1 1 23 501 523 501 523 0.96 10 13 9.5e-05 0.007 17.4 5.2 1 23 529 551 529 551 0.99 11 13 0.0039 0.29 12.3 7.1 2 23 558 579 557 579 0.97 12 13 0.00013 0.0093 17.0 2.8 1 23 585 607 585 607 0.98 13 13 1.3e-05 0.00093 20.1 0.8 2 23 613 635 612 635 0.97
Sequence Information
- Coding Sequence
- ATGCCGGAAGAAGAAAGCGATACTCGAGAAAATGACAAAACGAAAATCAAGGAGGTTATCGAAAAACCGGAGTTTACAATGAGTGAAAATGGGAAGCGATACGCGAAATGTGGCGTGTGTAACAAGAGCGTGTCGCACGGCGGCTGGACGCGCCACGCGCGTGCGCACCGCGGGGAGCGGCGCCACAGCTGCCACGCGTGCGGCCTGGCCTTCAACGACAGCGGCAACATGCAGCGGCACGCGCGCGCCATACACCAGCGCCAGCGGCCCTTCGCCTGCCCCTCCTGCCCCAAAACATTCTCTCGAAAGAGCCACTTAGAAGATCATACAAAGTCTCATTCGGATAGTCGAACATTTGTGTGTGACATATGTGGTAAGGGGTCTAAATCAAGCGCAGCATTGCGAATGCACGCGCGCACGCACGACGCGTGCAGGTTCCCGTGCGTGCAGTGCGGCGCGCGGTTCAAGCGGCGCGGCGAGCTGAGCGCGCACGTGTCCGTGCACACCGGGGAGAAGGCACACGTCTGCCACTGCGGGAAGAGCTTCCGACTGCGAAGCCAGCTAACTGCACATACTAGAGTACACCAGAAATCACGGATAGAGGAAATGGAAGATCTAAGCAATGCTGATACAATACGGTTCACTTCCATGCCGATGTATGGGCCCGCTCAGCCCCAGCACTACCGCGCCTGCACCTACTGCGTCAGCTCGCACCCGGTGCACAGCTACAAGGAGCACCTCGTCACGGCGCACTCCGACCTGCTGTTCCACTGCGAGGAGTGCAAGGCATACATCGACAAGAAAGACTTCTTCATTCACATGTCGCTCCACGCCTTACAACACACGACACTGGAggcgaaaaaaaagaaaattaaaaaaaaggaagaagtTATTTGCAAGCAAGAAGTTCACAATCCCAGCCCAGTGCCTCCTGAAAACCGACCTCTCCCCACGAAAACCAACGACATAAGACCCGCAGTGGTTAAAACCAAAAGGAGTGTTGAAGAGAATGAGTTCTCTGACCACAGCGACATGGAAGGCTTCGGGCCTCTACCCGAGTCAGTGTTCGAAGCTATAGAGGACTCGCAAGACAGCCAGCATATAGAATACGAGCAGAACACGAGCCGCGCCACGCCCGAGACTGAGCGCTGCAGCGATGAATCCAACAAATGTCCCGAACCCAAGagtaatcatttaaataatccTGCGGTAAATATTAATAAGCTTAATAATTGTTCAGTAGTCATAGAATCCATCGATCTAAATAACTGTGCCCAAATTAATATTGCagttaaaaatgataaaatcaaCAACAATCTTGCTCTACCAGCGAATAGCACTGCCTCAAACTCTACCGACGTTAGTGATAACGACGCGACGCACGAAGGGGCCAAGAAGAGCCACAAGAAGACACGCAATTGTCCCTTCTGTCCGAAACAATACACGGCATCCTCCAGCTACTACTATCACTTGAAATACTTCCACAAAGGCAGCAAGGAGCACGCGTGCGAAGTGTGCGCCAAGAAGTTCGGCACCAGGTCGTGCCTGACGCAGCACATGGCCGTACACACCGGACACCACGACTTCAAATGCCATCAGTGCAAAAAACAGTTCAAATCCAAAGCAAGCCTCTACATTCACGAGCAGACCCACAATGGAAAGAAGTCGTGGTCTTGCAGCCAGTGCCACACGTCGTTCAGATGGAAGACTCATCTGTTCAGACACATGAAGAGGCATACCGCCGAGAAAAGCCATGTCTGTACTATGTGTGGACGCGGCTTCAATGTCCGGTGTGATCTCCTGAGGCATGCGCGCACGCACACTGTAGAGAGCGTCACCTGCGATAAATGCGGCCAGAAATTCGCTCAACCACGATATTTAAAAGTGCACACAAGAAGACAGCATTTGAACGGTATTAAGAAGGTATCTAAGTAA
- Protein Sequence
- MPEEESDTRENDKTKIKEVIEKPEFTMSENGKRYAKCGVCNKSVSHGGWTRHARAHRGERRHSCHACGLAFNDSGNMQRHARAIHQRQRPFACPSCPKTFSRKSHLEDHTKSHSDSRTFVCDICGKGSKSSAALRMHARTHDACRFPCVQCGARFKRRGELSAHVSVHTGEKAHVCHCGKSFRLRSQLTAHTRVHQKSRIEEMEDLSNADTIRFTSMPMYGPAQPQHYRACTYCVSSHPVHSYKEHLVTAHSDLLFHCEECKAYIDKKDFFIHMSLHALQHTTLEAKKKKIKKKEEVICKQEVHNPSPVPPENRPLPTKTNDIRPAVVKTKRSVEENEFSDHSDMEGFGPLPESVFEAIEDSQDSQHIEYEQNTSRATPETERCSDESNKCPEPKSNHLNNPAVNINKLNNCSVVIESIDLNNCAQINIAVKNDKINNNLALPANSTASNSTDVSDNDATHEGAKKSHKKTRNCPFCPKQYTASSSYYYHLKYFHKGSKEHACEVCAKKFGTRSCLTQHMAVHTGHHDFKCHQCKKQFKSKASLYIHEQTHNGKKSWSCSQCHTSFRWKTHLFRHMKRHTAEKSHVCTMCGRGFNVRCDLLRHARTHTVESVTCDKCGQKFAQPRYLKVHTRRQHLNGIKKVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810331;
- 90% Identity
- iTF_00810331;
- 80% Identity
- -