Hamb014436.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458976.1:13380160-13384680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00017 0.012 16.6 1.1 1 23 296 319 296 319 0.96 2 11 0.0033 0.25 12.5 2.5 1 19 329 347 329 351 0.92 3 11 2.6e-05 0.0019 19.1 3.7 2 23 357 378 356 378 0.97 4 11 0.018 1.3 10.2 5.5 1 23 382 405 382 405 0.94 5 11 0.0022 0.16 13.1 2.4 1 23 408 430 408 430 0.98 6 11 0.00095 0.07 14.2 0.4 2 23 500 521 499 521 0.96 7 11 0.062 4.6 8.5 0.3 2 23 541 563 540 563 0.96 8 11 1e-06 7.7e-05 23.5 4.1 1 23 569 591 569 591 0.98 9 11 0.0014 0.11 13.6 2.3 1 23 596 618 596 618 0.97 10 11 0.0041 0.3 12.2 5.1 2 21 625 644 624 647 0.95 11 11 0.063 4.7 8.5 2.3 3 19 687 703 686 708 0.94
Sequence Information
- Coding Sequence
- atggaaGGCGAAGAGCGTAACTTGAATTTCGAAGGGCCTTACCCAATTCTGTTCATACCAAAAGTGTGTACATCTTTGGAGACCAACTGTGATCCGTcagaaaatgtgtttatacACTTGAACATCTCATCGCCAGACACAGAAGGCAACGAGACTGTCATATACAAAGGTTTCTGCAATGTAAAAGTGATGGAAGGAAATGATATCAACATCAGGTATGCAACACCTAATAGTTACTCAAGCCTTGACAACATACCTGTGATTCTGACTGAAGCTAATCAAATAACAATACCAGCTTACAACGATTCTCAAGTCTGGATTGATCCGGTTAGAAGTCCGTTCGTCTACAACCGTTGTGACTCTCCACCTCTGGAGACTTACACCATACATGAGACTAATGACAACCACGTTACTATCGAACAGCACAATACATATGTTACACAAAATGTGTATAATTACAATGAAGCTATTCGGTGCTCTCCAGTCCGGGAAGAACAAAAAGCTGTCAAGAAAATCCaagaaaatgttcaaaattcaGACAGTTATAATATGTATGGGGAAGATGAGTTTGAATGCGGTGTGTTCTTATCTCAGTTGTCCGAAGAAATTATTCATGAGAAAGATGCAAGGGCACGAGATGAAAGGAAATTTGTTGGTATGAAGACGGACAATGAAGCGTTGAAACAGCTGATGTCTACAAATATACAGTCCGTGTCGAGGCAGCAGAagactatattatttttaggtcATGACTCTGAGTCTGGTCAGACGGTTCAGAATATTTCCATTAATGATCCTTCGTTGGAGTGCGTTGGAGCTGGAGAAGTGGAGAGTGAAATTATTATTGAAGACTCCAACACAACAAGCAATCCACATGCGAAAAAATATCAATGCAACAAatgcaaacaaatatttgaccAACTGTCTGCCTTCAAGCTGCACATGGTCAGCAGCCACCGACTCTCCGTCTCCAGCAACCTCAAGTTCATGTGCACTGACTGCGGAAAAAGCTTAAAAAACCAAGAAAAGTTTGAGCAACACTGCCTTGGACACGGCGACCCAAATCTAGAATGTAACAAGTGCCACAAAGTCTTCGCGTCAAAATTCACCTTACGTAATCACCGTAAGATACATTCTCGAATGTTCCACTGCAGCTACTGTTCTAGGAGTTTTTCAACGGTGCAGGAGCTGCACGCACATTCGTCAAAATTCCACTTCACTTTTATGTGTGAATTGTGTTCGTTTGTTTGCAAAACTTTAACAGAACTGACGGCTCATcagaaaaatcataaaaacacCTCGAAAAACTCCAGTGAATCTGAGTTTGTTGAAGGTCTATTTGAAGATATAAGTGATATCTCGGTGACGGAAGACATTGTGAAACATGAGGAGGATGAACATCTTCAAACTCCTGACTCCGTCATTGCGAAGGTGATGTCTAATAAGATCTTTCGATCTCATCGCCTGCCGAACAAGGAAGCAAGGAAGTGTAACAagACCTGTGAAGTTTGTCTTAAAAAGTTTGACCGGATCGGAGACCTGAAGAGGCACCTCATCGAGCATGTGATTAGAAGTACTCTGGCCAAAAACCCCGTGAACAAATTCGGGGTCCTCAACATCCGATGTGAGATCTGCCAGGAAAAGGTATTTACCAAAATCGATAGATACAAAGCCCATTTGAGGGAGCACGCTAAACTTACTCTATACAAATGCACATTCTGCGATAAATCCTTTAGCGACTCAAGCAACTTttccaaacacaaaaaaatacacggCACCACGTACTTCCAATGCGACTTGTGTCAACGCAAATTCAATTCCAAGAAAATGATATCCCAGCATATGGAATATCACAACAAGAATCGGCCCATCAAGTGTCGATATTGCGAGAAAGTGTTCCATTTTGAGTCAATGCTGAATAAGCATATGCGATGCTCGCATACCAAGGTAACGACGACCAAATTTAGGTGTAGATTCTGCTGCCAGTATTTCAAAAGTTTGAAGGAGAAATGGGATCATGAATGGACGATTCATAATGTTAGGAAGGTGATTGTGGACTGTCTGGTCTGCGGGTCGAGGTTTAGGAAGTATTCGGAGTTGAAGAGACATTGTACAGAGGAACATGACACGGTCATTCCTCCAGCTAAGAGGTTATTAAGATGGAAGTTGAATAGAAAGTTGAAAATGATTGAAGATCAATAG
- Protein Sequence
- MEGEERNLNFEGPYPILFIPKVCTSLETNCDPSENVFIHLNISSPDTEGNETVIYKGFCNVKVMEGNDINIRYATPNSYSSLDNIPVILTEANQITIPAYNDSQVWIDPVRSPFVYNRCDSPPLETYTIHETNDNHVTIEQHNTYVTQNVYNYNEAIRCSPVREEQKAVKKIQENVQNSDSYNMYGEDEFECGVFLSQLSEEIIHEKDARARDERKFVGMKTDNEALKQLMSTNIQSVSRQQKTILFLGHDSESGQTVQNISINDPSLECVGAGEVESEIIIEDSNTTSNPHAKKYQCNKCKQIFDQLSAFKLHMVSSHRLSVSSNLKFMCTDCGKSLKNQEKFEQHCLGHGDPNLECNKCHKVFASKFTLRNHRKIHSRMFHCSYCSRSFSTVQELHAHSSKFHFTFMCELCSFVCKTLTELTAHQKNHKNTSKNSSESEFVEGLFEDISDISVTEDIVKHEEDEHLQTPDSVIAKVMSNKIFRSHRLPNKEARKCNKTCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQEKVFTKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDLCQRKFNSKKMISQHMEYHNKNRPIKCRYCEKVFHFESMLNKHMRCSHTKVTTTKFRCRFCCQYFKSLKEKWDHEWTIHNVRKVIVDCLVCGSRFRKYSELKRHCTEEHDTVIPPAKRLLRWKLNRKLKMIEDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810403;
- 90% Identity
- iTF_00274708; iTF_00810403; iTF_00273905;
- 80% Identity
- -