Basic Information

Insect: Caradrina kadenii
Gene Symbol: -
Assembly: GCA_947462355.1
Location: OX381684.1:1296989-1301127[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00014 0.0082 16.6 1.1 1 23 296 319 296 319 0.96

2 11 0.0029 0.17 12.5 2.5 1 19 329 347 329 351 0.92

3 11 2.3e-05 0.0013 19.1 3.7 2 23 357 378 356 378 0.97

4 11 0.028 1.6 9.4 6.5 1 23 382 405 382 405 0.94

5 11 0.00044 0.026 15.0 2.2 1 23 408 430 408 430 0.98

6 11 0.00082 0.047 14.2 0.4 2 23 502 523 501 523 0.96

7 11 0.053 3.1 8.5 0.3 2 23 543 565 542 565 0.96

8 11 9e-07 5.2e-05 23.5 4.1 1 23 571 593 571 593 0.98

9 11 0.00089 0.051 14.1 2.5 1 23 598 620 598 620 0.98

10 11 0.0035 0.2 12.2 5.1 2 21 627 646 626 649 0.95

11 11 0.054 3.1 8.5 2.3 3 19 689 705 688 710 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00014	0.0082	16.6	1.1	1	23	296	319	296	319	0.96
2	11	0.0029	0.17	12.5	2.5	1	19	329	347	329	351	0.92
3	11	2.3e-05	0.0013	19.1	3.7	2	23	357	378	356	378	0.97
4	11	0.028	1.6	9.4	6.5	1	23	382	405	382	405	0.94
5	11	0.00044	0.026	15.0	2.2	1	23	408	430	408	430	0.98
6	11	0.00082	0.047	14.2	0.4	2	23	502	523	501	523	0.96
7	11	0.053	3.1	8.5	0.3	2	23	543	565	542	565	0.96
8	11	9e-07	5.2e-05	23.5	4.1	1	23	571	593	571	593	0.98
9	11	0.00089	0.051	14.1	2.5	1	23	598	620	598	620	0.98
10	11	0.0035	0.2	12.2	5.1	2	21	627	646	626	649	0.95
11	11	0.054	3.1	8.5	2.3	3	19	689	705	688	710	0.94

Sequence Information

Coding Sequence: ATGGAAGGCGAAGTGTGTAACTTGAGTTTCGAAGGGCCTTACCCAATTCTGTTCATACCAAAAGTGTGTACAACATTGGAGACCAACTGTGATCTGTCAGAAAATGTGTTTATACACTTGAACATCTCATCACCAGACACTGAAGGCAACGAGACTGCCATATACAAAGGTTTCTGTAACGTGAAAGTGATGGAAGGGAATGATATCAACATCAGGTACGCAACACCTAATAGTTACTCAAGCATTGATAACATACCAGTGATTCTAACTGAAGCGAATCAGATAACAATACCAGCTTACAATGATTCTCAAGTCTGGATTGACCCGGTTAGAAGCCCGTTTGTCTACAACCGTTGTGACTCACCACCTCTGGGAACTTACACCATACATGAGACAAATGACAACCACGTTACTATAGAACAGCATAATACATATGTTACACAAAATGTGTATAATTACAATGAAGCCATTCGGTACTCTCCTGTCCGTGAAGAACAAAAAGCGGTCAAGAAGATACAAGAAAATGTTCAAAATTCAGACGGATATAATATGTATGGGGAAGATGAGTTTGAATGTGGTGTGTTCCTATCCCAGTTGTCTGAAGAAATTATTAATGAGAAGGACGCAAGGGCACGAGATGAGAGGAAATTTGTTGGTCTGAAGACGGACAATGAAGCATTGAAACAGTTGATGTCTACAAATATACAGTCTGTGTCGAGACAGCAGAAGACTATATTGTTTTTGGGCCATGACTCTGAGTCGGGTCAGACAGTTCAGAATATTTCCATTAATGATCCTTCGTTGGAGTGCGTAGGAGCTGGTGAAGTAGAGAGTGAAATTACTATTGAGGACTCCAACATAACAAATAATCCACATGCAAAAAAATACCAATGTAACAAATGCAAGCAGATATTTGACCAACTATCTGCCTTCAAGCTCCACATGGTTAGTAGTCACCGGCTCTCCGTCTCCAGCAACCTCAAGTTCATGTGCACTGACTGCGGCAAAAGCTTGAAGAACCAAGAAAAGTTTGAGCAACACTGCCTCGGCCACGGCGACCCAAATCTAGAATGTAACAAGTGCCACAAAGTCTTCGCATCAAAATTTACCTTACGCAATCACCGTAAGATACATTCTCGTGTTTTCCACTGCAACTACTGTTCTAGAAGCTTCTCGACGGTGCAAGAGTTGCACACACACTCGTCAAAATTCCACTTCACTTTTATGTGTGAGTTGTGTTCGTTTGTATGCAAAACTCTATCAGAATTGACAGCTCATCAGAAAAATCATAAGAGCTCCAACTCTTCGAAGAACTCCAGCGAGTCTGAGTTCGCTGAAGGTCTCTTTGAAGACATAAGTGACATCTCAGTGACGGAAGACATTGTGAAACATGAGGACGATGAACATCTTCAAACTCCTGACTCCGTTATTGCGAAGGTGATGTCCAACAAGATATTTCGAGCTCATCCCATGCCGAATAAGGAAGCGAGGAAGTGTAACAAGACCTGCGAAGTTTGTCTTAAGAAGTTCGACCGGATTGGCGACCTGAAGAGGCATCTCATCGAACATGTGATAAGGAGTACTCTAGCCAAGAACCCCGTGAACAAGTTCGGGGTCCTTAACATCCGATGTGAGATCTGCCAGGAAAAGGTATTTACAAAAATCGATAGATACAAAGCCCATTTAAGGGAGCACGCTAAACTCACTCTCTACAAATGCACATTCTGCGATAAATCCTTTAGCGACTCCAGTAACTTTTCCAAGCATAAAAAAATCCACGGCACCACCTACTTTCAATGTGATATGTGCCAACGTAAATTCAATTCTAAGAAAATGATATCCCAACATATGGAATACCACAACAAGAATCGGCCTATCAAGTGTCGATATTGCGAGAAAGTGTTCCATTTTGAGTCGATGCTGAATAAGCATATGAGATGCTCACATACCAAGGTAACGACGAGCAAGTTCAGGTGTAGGTTCTGCTGCCAGTACTTCAAGAGTTTGAAGGAGAAATGGGATCATGAATGGACGGTTCACAATGTTAGGAAGGTGATTGTGGACTGTTTAGTCTGCGGGTCCAGGTTTAGAAAGTATTCTGAGTTGAAGAGACACTGTACGGAAGAACATGACACCGTCATACCTCCAGCTAAGAGATTACTGAGATGGAAATTGAATCGAAAGTTGAAAATGATTGAAGATCAGTAG
Protein Sequence: MEGEVCNLSFEGPYPILFIPKVCTTLETNCDLSENVFIHLNISSPDTEGNETAIYKGFCNVKVMEGNDINIRYATPNSYSSIDNIPVILTEANQITIPAYNDSQVWIDPVRSPFVYNRCDSPPLGTYTIHETNDNHVTIEQHNTYVTQNVYNYNEAIRYSPVREEQKAVKKIQENVQNSDGYNMYGEDEFECGVFLSQLSEEIINEKDARARDERKFVGLKTDNEALKQLMSTNIQSVSRQQKTILFLGHDSESGQTVQNISINDPSLECVGAGEVESEITIEDSNITNNPHAKKYQCNKCKQIFDQLSAFKLHMVSSHRLSVSSNLKFMCTDCGKSLKNQEKFEQHCLGHGDPNLECNKCHKVFASKFTLRNHRKIHSRVFHCNYCSRSFSTVQELHTHSSKFHFTFMCELCSFVCKTLSELTAHQKNHKSSNSSKNSSESEFAEGLFEDISDISVTEDIVKHEDDEHLQTPDSVIAKVMSNKIFRAHPMPNKEARKCNKTCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQEKVFTKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMISQHMEYHNKNRPIKCRYCEKVFHFESMLNKHMRCSHTKVTTSKFRCRFCCQYFKSLKEKWDHEWTVHNVRKVIVDCLVCGSRFRKYSELKRHCTEEHDTVIPPAKRLLRWKLNRKLKMIEDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810403;
90% Identity: iTF_00809515;
80% Identity: -