Hvit018739.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- Mbd2
- Assembly
- None
- Location
- KK961740.1:569642-583567[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-05 0.051 14.0 0.0 29 71 24 61 10 67 0.81 2 2 0.00018 0.73 10.3 0.1 20 74 74 139 68 142 0.80
Sequence Information
- Coding Sequence
- atgatacgGAATACTGTTGAGGCCTTGAAACAAGTGACCATGTCCCTTGGTGTAGAAGTATTTAGGGACAGTAAAGGGGCTATGGTTGTTTACAGCCCGGACGGAAGGAAGGTGCGCAGCAAGCCTCAACTCGCTCGATGTTTGGGAGACGTCATAGACTATGGGTCGTTTGACTTCCGCAGCGGCAAGGTCAATAACCTACTTCTGCGGAAGCAGAGAAAACAAAGGTCTTCTCAAGTAGAATACAGCCGAGGTGTTAGGACAGATGCTTCCCTGGTGCCACCGATTCGCCAGACTGCATCTATCTTCAAACAGCCGGTAACAGTGTACAAGACACAGGAAGGGAAAGTAAAGACTGATTTCAAGCATGGTCCACAAGAGAAACCCAAGCAGTTGTTCTGGGAGAAGCGGCTGGAGGGGTTACGAGCGTGTGACACGGACGGTCACGAGCTGAGGGCCATGGAGTTGCCGAGGGGACTGAAAGCAGTGGGTCCCCACGTGAACGAGGAGACACTGCTGCAGTCCGTGGCCACGGCACTCCACGTGTCCAGTCAGCCCATCACCGGCCAGACGGGCTCGAGAACCTCCCTCGACAAGAACCCCGGGGTCTACATCAACCCTGACCAACCCCTCGTGCAGGCTCTGTCTGTAGGAGATGAAGACATCAAGAGACAAGAGGACAGGGTTCACTCAGCCAGACTGAAGTTACAGGAGGCCATCAAGGGGATGCTGGCGTAG
- Protein Sequence
- MIRNTVEALKQVTMSLGVEVFRDSKGAMVVYSPDGRKVRSKPQLARCLGDVIDYGSFDFRSGKVNNLLLRKQRKQRSSQVEYSRGVRTDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDTDGHELRAMELPRGLKAVGPHVNEETLLQSVATALHVSSQPITGQTGSRTSLDKNPGVYINPDQPLVQALSVGDEDIKRQEDRVHSARLKLQEAIKGMLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00645047;
- 90% Identity
- -
- 80% Identity
- -