Hvit011196.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- LRRFIP2
- Assembly
- None
- Location
- KK961690.1:507561-536678[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-23 3.8e-19 70.0 4.4 90 137 8 55 3 56 0.96 2 3 9.2e-25 3e-20 73.6 13.1 1 94 74 167 74 167 0.83 3 3 1.1e-27 3.6e-23 83.1 14.1 133 300 157 307 152 307 0.80
Sequence Information
- Coding Sequence
- ATGCAGATAGAACTGGTAGTGCACGAGCTGAAGGAGCTGGAGGAGAAGTTCCGGAAAGCGATGATCGCCAACGCTCAGCTGGACAACGAGAAGGCGGCTGTAGCGTACCAGGTGGACCTGTTCAAGGATCGGTACGAGGAACTGGAGGAGCAGAACCTGCAGTTGTTGGTAGTGCCAATTGATGCTGGAGGACTAGCAGCACGTGTGGGCTGGGCGGTGGCTGAGGCACGGTTGGCGGCCAAACGTCAGGCTCGTGCAGAGGCCCGAGAGATCAGGATGCGAGAACTGGAGAGGATGCAGCGGGAGAGTGAGGATGGCGACAAGGTCCACGACATCTACTCGACTCCAGATGCGGTGAACCGGTCAGTGCGAGCAGGGTCGGTAGCGACACCTCGCTCCTTGCTCTCGTCGAACAACAGCTACCACTCTTCACGCCGCAGTTCCGAGGACTCCCTGGAGGAGGTCAACAGTATGCGAGATGTGCGGAGGGAGCACAAAGAGACGTGTAGACAGCTGGAGCACACGAAGAGACACCGTACCAAGCTACAAGAGGACCTGGAAGTCACCAACACACAGCTCACGGAGCTAGTGCAACTGATTCAGGAGAAGGGGTTGGTGGTGGTGGAGGGTGACTGTTCGTCATCTGACGAGGAGAGTGAAGAAGCTGAGCCTCGCCCTAAGAAACGGCCAAAGAAGGCTCTGGTCTCGGCAGAGGTGGCAGATAAGTTCGTCGAGGAGCGCAACGAGTTGGTGGATGAACTGCGCAGGGTCAAGATGGAGCTGGAGGAGGAGCGAGCGCACTCCCGCGGTCGACACACCAACGGTCCCACTGACGACTCGGAGGACATCCAGCGGGAAGCAAACAAACTGCTCGGAGACTACAAATTCAAGCTACAAAAAGCCGAACAAGATGTCAACACCCTGCAGGCCACTgtgGCCAGACTGGAGAGTCAAGTAGTTCGGTATAAGTCTGCTGCGGAGACTTCTGAAAAATTAGAAGatgaattaaaattagaaaaaagaaaattacaaagagAGGTAGTTGCGGGAGGCGCAGGCCAGAGTCGAGGAGCTGGAGACCTCACACTCACATCTACAACGGAGATTGGACAAGCTCAAGAATGCAAAGTCTGCACTCCTGAAGGACTTGTAGCACCAAGGAATCGCCCCCCGCAAGATGGGCGGCAACTCCTCGTGATAGTTCCGGTCTCAGCCACTGCCACCCAGAGCTGTCCGGACCCGACTCATGTACATGGTGTATATAGCCCCAGACTGTACAGTCTCAAAACGCTGTTGCCAGTTTTGGGACAAAACATAACCGCATTGCCAACTCGAGTAAATAACGTTAATCGAAGTACTGCCAAGAATTATTTGAGATATGCTCAAAACGCTTTATAG
- Protein Sequence
- MQIELVVHELKELEEKFRKAMIANAQLDNEKAAVAYQVDLFKDRYEELEEQNLQLLVVPIDAGGLAARVGWAVAEARLAAKRQARAEAREIRMRELERMQRESEDGDKVHDIYSTPDAVNRSVRAGSVATPRSLLSSNNSYHSSRRSSEDSLEEVNSMRDVRREHKETCRQLEHTKRHRTKLQEDLEVTNTQLTELVQLIQEKGLVVVEGDCSSSDEESEEAEPRPKKRPKKALVSAEVADKFVEERNELVDELRRVKMELEEERAHSRGRHTNGPTDDSEDIQREANKLLGDYKFKLQKAEQDVNTLQATVARLESQVVRYKSAAETSEKLEDELKLEKRKLQREVVAGGAGQSRGAGDLTLTSTTEIGQAQECKVCTPEGLVAPRNRPPQDGRQLLVIVPVSATATQSCPDPTHVHGVYSPRLYSLKTLLPVLGQNITALPTRVNNVNRSTAKNYLRYAQNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -