Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 5.1e-22 5.5e-18 66.4 8.2 109 170 1 57 1 59 0.97

2 3 4e-12 4.3e-08 33.9 2.6 241 275 56 90 55 90 0.96

3 3 0.0036 40 4.5 0.2 243 269 103 129 92 135 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	5.1e-22	5.5e-18	66.4	8.2	109	170	1	57	1	59	0.97
2	3	4e-12	4.3e-08	33.9	2.6	241	275	56	90	55	90	0.96
3	3	0.0036	40	4.5	0.2	243	269	103	129	92	135	0.78

Coding Sequence: ATGATAGACTTCCTGGAGACATGGATACCTCTGATCCCAGGTTGGATTCTAGACAATATCCTGCAACAGCTGATTCTGCCCAGGCTCCATCATGAGGTGGAGGAGTGGAACCCCCTCACAGACACCATCCCCATACATACCTGGACACACCCCTGGCTACCTTTGCTCGATAATTGGAACTGGGTGATGGAATGGGCAGAGCTGCTGCCATCACATGCAATGGCCTCTCTCCTTGACAAGAGCTTCTTCCCCAAGTGGCTTCAGGTGCTGACTCTCTGGCTCAATCTCAATCCCAACTACGACCAGGTCACCAACTGGTACTCAGGGTGGAAGGGAATGGTTCCAGATTCTCTCATGGCTGAGCCACTCGTCAAAGAACACTTCAGGGCTGCCTTGGAGATGATGAATAGGTCTGTGGGTGGTACACCAGTACCTCAGCCTCCCCAGCCAGACACTTCTCAGGCTCAGGCCAGATATCAGGGTATTGCTGAGAGTGTGAGGACGGCCCAACAGATTCCTCAAGGGTTTAAGGAGCTGGTGCAGAAGAGATGCGAGGAACGTGGAATTGTGTGGCTACCAATCCCCAATCGCTACAGAGAGGCCAAGCAGATCTACCGCTGCGGCACTCTACAGGTCTATATTGACCGCAATGTACTGTTTGTCTGCAATTCTGGCCAGTGGGAACCCACCTCCCTCACCGCTCTTTTGGATATGGccgtataa
Protein Sequence: MIDFLETWIPLIPGWILDNILQQLILPRLHHEVEEWNPLTDTIPIHTWTHPWLPLLDNWNWVMEWAELLPSHAMASLLDKSFFPKWLQVLTLWLNLNPNYDQVTNWYSGWKGMVPDSLMAEPLVKEHFRAALEMMNRSVGGTPVPQPPQPDTSQAQARYQGIAESVRTAQQIPQGFKELVQKRCEERGIVWLPIPNRYREAKQIYRCGTLQVYIDRNVLFVCNSGQWEPTSLTALLDMAV

Sequence clustering based on sequence similarity using MMseqs2