Hvit018839.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962270.1:1129949-1130482[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-08 1.9e-05 25.1 0.0 5 43 1 39 1 40 0.94 2 2 7.2 2.6e+03 -1.0 0.0 21 33 156 168 156 173 0.78
Sequence Information
- Coding Sequence
- ATGGAAAGGGCGATTGCGTCATTCAAGAACGGTGATACGGGCATTAATGCAGTTTGTCGGGTGTACGGGGTGccgaaaaaaacattaaaacgtcgCCTGGCCGGAACAAATACCTACGCAATTGATTCTAAACAGGTGTTCGGTCGTCCCCAAGACTTGCCAGCTGAGTTGGAAAATGAATTGGTACAGAACGTATTAGATTTAGAGAAAATGTTTCTTGGAGTTACCCGAGATTTGAAGAAGTTGGCGTTTCAACTAGCTGAGGCTAATGGTCTACCGCATAGATTCAATATGGAAACCAAAATGGCAGGAGATAAAtggtattattcttttatttcaaggCATCCACAGTTGTCTTTACGAAAACCGGAGGCAACATCAATGGCTAGGGCCAGTGGTTTTATAAAGGAGAGAACGGATATTTTATACGATACCTTGacaaaaataattgatgaaaacaaGCTGCAAGCCTCTGACATTTTCAATGTCGACGAGACTGCCCTTTCAACCGTCCAGAGGCCACGTAAAGTTTAG
- Protein Sequence
- MERAIASFKNGDTGINAVCRVYGVPKKTLKRRLAGTNTYAIDSKQVFGRPQDLPAELENELVQNVLDLEKMFLGVTRDLKKLAFQLAEANGLPHRFNMETKMAGDKWYYSFISRHPQLSLRKPEATSMARASGFIKERTDILYDTLTKIIDENKLQASDIFNVDETALSTVQRPRKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00808221;
- 90% Identity
- iTF_00808221;
- 80% Identity
- -