Hvit010687.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961832.1:1353644-1354406[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-11 3.6e-08 33.8 0.0 1 43 20 62 20 64 0.95 2 2 4.3 1.6e+03 -0.2 0.0 21 34 180 193 179 198 0.80
Sequence Information
- Coding Sequence
- ATGCAACCTAACCTCAAACACGAAATGGCGAATAAAGGCAGAAAATACGGTATATGGAAGGAAGAGGATATGGAAAGGGCGATTGCGTCATTCAAGAACGGTGATATGGGCATTAATGCAGTTTGTCGGGTGTACGGAGTGccgaaaaaaacattaaaacgtcgCCTCGCCGGAACAAATACCTATGCAACTGATTCTAAACAGGTGTTCGGTCGTCCCCAGGACTTGCCAGCTGAGTTGGAAAATGAATTGGTACAGCACGTATTAGATTTAGAGAAAATGTTTCTTGGAGTTACCCGAGAAGATTTGAAGAACATGGCGTTTCAACTAGCTGAGGCCAATGGTCTACCGCATAGATTCAATATGGAAACCAAAATGGCAGGGGATAAAtggtattattcttttatttcaaggCATCCACAGTTGTCTTTACGAAAACCGGAAGCAACACCAATGGCTAGGGCCAGTGGGTTTATAAAGGAGAGAACGGATATTTTCTACGATACCCTAACAAAAATAGTTGATGAAAACAAGCTGCAGGCCTGTGACATTTTCAATGTCGACGAGACTGCCCTTTCAACCGTCCAGAGGCCACGTAAGGTTTTGGCTCAAAAAGGCAAACATCAAGTAGTGCAGAAAGGGGTACCCTGA
- Protein Sequence
- MQPNLKHEMANKGRKYGIWKEEDMERAIASFKNGDMGINAVCRVYGVPKKTLKRRLAGTNTYATDSKQVFGRPQDLPAELENELVQHVLDLEKMFLGVTREDLKNMAFQLAEANGLPHRFNMETKMAGDKWYYSFISRHPQLSLRKPEATPMARASGFIKERTDIFYDTLTKIVDENKLQACDIFNVDETALSTVQRPRKVLAQKGKHQVVQKGVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00808258;
- 90% Identity
- iTF_00808258;
- 80% Identity
- -