Hpla012516.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- -
- Assembly
- GCA_963695495.1
- Location
- OY968842.1:3963847-3965509[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00099 7 6.5 0.1 25 54 127 156 123 156 0.93 2 7 0.0036 25 4.7 0.0 23 46 181 204 177 210 0.86 3 7 0.0053 38 4.2 0.0 21 48 207 233 203 236 0.87 4 7 0.0027 19 5.1 0.1 23 47 265 289 258 296 0.82 5 7 0.034 2.4e+02 1.6 0.1 21 43 291 313 283 320 0.83 6 7 0.00087 6.2 6.7 0.0 21 49 319 347 314 350 0.86 7 7 0.0012 8.8 6.2 0.2 21 44 347 370 343 376 0.90
Sequence Information
- Coding Sequence
- atggaTCAGCAACAATTGGCGAATGTTTGTCGTACGTGCCTCGTCGAAACCGGTCAATTCCAATCGATTTTCGTGCCAGACGAAAATGCCGAACTGCTCGTGCACACGGACGTGCACTCGAAACCGAGTTCGAATCATTCGGAAGCGATCGCGGAGGAGCCGGAAACGGTCGAGATGAACGTGGTCGAAATCAATCCGGAAACCGTGCTGGGCAGCGACCTGAAGGGCGAGGAAATCAGCTCGCAGAACGACATCGAGGAAATCGTCATCACCGGACCGTCGAATCTGAACCTATTCAACAAGACGAcgggcgacgacgacgtcgacgacaaATGCTACATGGACGACAATCACGAGTGCGATCCGATGAAAGGCACCGCAGTGTGTACCGTGTGCGGCAAACGGTTCGGCAAATCCTCCCACCTGAACCGTCACATGAAGATCCATTCGATCGTGAAACCGCACGTGTGCACGAATTGCGGCAAAAGTTTCGCTCGGGCGGAACAACTGGCCAATCACATGAACGTGCACGCGGGCGTGAAGCCGCACGTGTGCAAGATATGCGCGAAAGGTTTCAATCAGATATCGAACCTGAAGGACCACATGCGAACGCACAACGGCGAGAAACCGTTCCTCTGCTCGACGTGCGGCAAAGGGTTCAATCAGCTCGGCAACCTGCGGCAGCACACGATCCGTCACAGCGGCATCAAGGCGCATCTGTGCAGCATCTGCGGCAACGGGTTCGCCAGCAAGGGCGAACTGTGCGCCCACTTGCGGAAACACACAGGTGCGAGACCGTTCGTCTGCCCGATTTGCAATCACGGCTTCaccacgtcgtcgtcgctgacGAAGCACAAACGCATCCATTCCGGCGAGAAGCCGTACGAGTGCGAGGTGTGCAAGATGAAGTTCTCGCGGTCGGGCATCTTGGCGCGACACAAACGCACGCACACCGGCGAGAAGCCGTACGTGTGCAAGTACTGCACGAAGGCGTTCTCGCAGTCGAACGATCTCAGCTCGCACCTGCGGATACACACCGGCGAGAAGCCGTACATTTGCGACTGTTGCGGGCAAGCGTTCAGGCAGAGCTCGGCGCTGAAGACGCACAAGAAGACGCACAATAATCATAGCGGTTCGACGATCGATTCGAAGATGGTCATGGGTATGGTGCGGAAAAAGCTGCTGGACACGCTGAAATAA
- Protein Sequence
- MDQQQLANVCRTCLVETGQFQSIFVPDENAELLVHTDVHSKPSSNHSEAIAEEPETVEMNVVEINPETVLGSDLKGEEISSQNDIEEIVITGPSNLNLFNKTTGDDDVDDKCYMDDNHECDPMKGTAVCTVCGKRFGKSSHLNRHMKIHSIVKPHVCTNCGKSFARAEQLANHMNVHAGVKPHVCKICAKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSICGNGFASKGELCAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYVCKYCTKAFSQSNDLSSHLRIHTGEKPYICDCCGQAFRQSSALKTHKKTHNNHSGSTIDSKMVMGMVRKKLLDTLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00807786;
- 90% Identity
- iTF_00807786;
- 80% Identity
- iTF_00807786;