Hpla003571.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963695495.1
- Location
- OY968832.1:12475980-12480708[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-109 4e-105 351.0 30.5 1 300 28 327 28 327 0.93 2 3 0.0051 73 2.2 3.8 120 168 325 373 324 387 0.86 3 3 0.08 1.1e+03 -1.8 4.6 6 228 358 391 346 402 0.39
Sequence Information
- Coding Sequence
- ATGGATGGTGTAGGTGGACGAAGACGAGCGGCAAATAAGTCATCTGCCGAGGATCAGGCATTagatcaaattgcaaaagagGCAGAAGCACGTCTATTGGCGCGAAGACAAGCGAGGGCCGAAGCAAGGGAGATTCGTATGCGTGAATTGGAGAGACAACAACGGGAACAAGAAGAGAACGCCGACAGGCAATTCGACATGTTAACGGAACCGATGGCCCGTGTGGCAAGGACGAGCGGTAACAGATACCTGTCGAGTAGAAGAAGTTCGGAGGATTCGTTGGAGGATGGCGGCAGTATAAGGGATTTAAGGCATGAGCTCAAAGAAGTCGAGGACAAGTTCCGCAAGGCGATGATAGCCAATGCTCAATTAGACAATGACAAAGCGGCGCAAACATATCAATTGGAATTACTCAAAGATAGGTTAGAAGAATTAGAGGAAGACCATTCGCAATTGAGGCGGGAACATCGGGACAAGTGTAGGGAATTCGATCAGTTGCACAGGACGACGGAGAAGCTAAAGAGCGATTTGGTCGTGACCAAAGCGTTATTAGACGAACGGGACAAATTGATAGCCGAGAAAGGTTTAGTTATAGTCGGTGACGAGACGCTGATAGATGATAGCATTAATGCGGCAAACGAAAATGGTACCGTTAACGGTACGAGTACACCAAAAAAGGCGTTGGTTAGCGTCGAAAATGCGCATATGTTAGAGAACGCCGGCGAGGGCAGTTTAGATGTAAGATTAGCGAAATTTGCAAGGGAAAGGAGCGAATTGCAAGATCAAATAAGTCACTTAAAGTTAGAATTGGAGGAGGAGAGGAACAAGAAGCGAAAGACCAGCGTCAATTCCGGCGGTATAACGTTGAACGGACCGAATACGGAAGGCGATTACGACGTGGCTGATTTCCAAAGAGAAGCTAGCAAACAATTGGCCGAGTATAAATTCAGGGCGCAGAAAGCGGAACAGGACGTCGCCACGTTACAGGCGACCGTCGCCCGTTTGGAGAGCCAAGTGATACGGTACAAATCGGCGGCGGAAGTGTCGGAAAAATCGGAGGAAGCTTTAAAAGCTGAAAAGCGTAAACTGCAAAGAGAGGCAAGAGAAGCTCAAAGTAGAGCCGACGAATTGGAAACATCAAACACGCACTTACTGAAGCGGCTcgacaaattgaaaaatgctAAATCTGCTCTATTGAAAGAACTTTGA
- Protein Sequence
- MDGVGGRRRAANKSSAEDQALDQIAKEAEARLLARRQARAEAREIRMRELERQQREQEENADRQFDMLTEPMARVARTSGNRYLSSRRSSEDSLEDGGSIRDLRHELKEVEDKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEDHSQLRREHRDKCREFDQLHRTTEKLKSDLVVTKALLDERDKLIAEKGLVIVGDETLIDDSINAANENGTVNGTSTPKKALVSVENAHMLENAGEGSLDVRLAKFARERSELQDQISHLKLELEEERNKKRKTSVNSGGITLNGPNTEGDYDVADFQREASKQLAEYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEVSEKSEEALKAEKRKLQREAREAQSRADELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -