Hpse018480.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376329.1:7357081-7362556[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-07 0.00011 22.2 0.0 3 39 142 178 140 181 0.92
Sequence Information
- Coding Sequence
- ATGGATAGTGACGCGAAGGCCAAATGGAAGTGTGACGAATGTCTCAGCAAGCATCTTATTAAAGACAAAAATGAAAAGGAGAGTTCTCTGCCGAAAGTTAACTGCACGTGCGGTACTGTCACTCTGTCTAAAGAAGACGTCAGAGATATTCTCAAAGAAGAGTTTCTCAATATGAAATCTCAATTGTTGAATGAGTTAAGGCACAGTCTGAAAGAAATGGTAAAAGAGGAACTAAAACCCTATATAAATAAAATGGACGAAATGGAGAAATCTCATGTATTCTTGAACGAAGCATATGATGTAGCTAAAGTTGACGCCGAGAAGTACCAGCAAGCTGTAATAAAGCTTCAATTTGAGAATGAAAATCAAAAGACTACAATTCGAGATAACACTATAGTAAAAAAAAGAAAAGCATACAACCAAGAAAGTTTGAAAAATGCTATAGAAGCAGTGAAGAAGGGAATGTCCAAAAAATTGGCTTCAAAAACTTTTAATGTACCGAGAGGGACCATTCAATGTCGATTGAAAAATGTGAACTGTAAAGATCTTCCAGGTCCCAATCCGGTACTAGATAAAGAAGAAGAAGACGCCTTAGTAAGGTGGTTAAATGAGTGCTGCCGTAAAGGCTTCCCCAAAAGGAAGATAGATTTGCAATTAAGCGTGGCAAGTTTCATAAAAAAGGCGGGCCGTAAAAATCCTTTTAAAAATGGCTTTCCAGGCAAAAAATGGAATTCTCTTTTTATGCGACGCCATCCAGAATTGAGCGAAAGAACGCCTGAATCAGTTACATCTGCAAGTGCTGCAGTCTCTGAGCAGGATATCAAAGGTTGGTTTTCGAATATCGAATCATACTTAAAAGATAACGACTATTATGAAGTCCTGTCTGATCCGAGTAGGATTTTTAACGGAGACGAATCAAATTTTCAGCTTTGCCCCAAAAGCGGGAAAGTCCTTGCTTTAAGAGGAGAAAGAGATGTTTATGAAGTAGATCATGCGGCTGCAAAATCAGCTCTCACAGTTCTATTCACCTTTGGAGCCAACGGCGACATAACGCCTCCTCTTGTTGTTTTTCCCAATAAAAGACTTCCAAAGGACATAACATCGACAGTTCCGGGTGAGTGGGGAATAGGACTAAGCGATTCAGGATGGATGAAAGCCGAACTGTTCTACGATTATATAAAAAACGTATTTCATCCTTACCTTCTGCGAACACAAAGGAAATTCCCAATTATATTATTTGTGGATGGCCATAAAACCCATCTTAGCATTGACGTCAGTGAGCTGTGCAGGAGTCTGGACATTGTCCTAATAGCGCTGTACCCTAATGCAACAAGATTATTGCAACCAGCCGATGTTGCTGCATTTAGACCTCTAAAGTTGGCATGGAAAAACAGCGTACTGCAATGGAGAAGGGACCATCCATTGGAGACACTCACAAAGAACAATTTTGTGCCACTACTGAAAGACGCGTTAGAAAATGGCGTGCAACCATCCACAGTCATAAATGGATTCAGAACAACCGGGTTATATCCATGGAATTCCGAAGCTATTAATTACAAAAAATGTCTAGGAAAAGGCTCCAGCGAAACGAAAAAAAGCACAAAGGAAGAACAGAAGGTTATGACTAAAGACATTTTGCATCAACTAGTTGGGACACAAAAGATGACTGCTTTACAAAATGTGTCTATAGATAGTCTTTCAGATAGTGACAAAATACTTAAAAAAATCTGCAATTTTTTCCAAAATAATGAAAAGGATAATACGGCCCCAGTTTTAAATGATTCAATAGACCTACTGACAAATGATTTAGAAGGGACTTCAACAAATAATGTTTCAGATTACGTCAACATCAATAATTTGCCACTATTATTTTTTGACGATTTAGTGACATCAAAGTCACCAAACCTGATCAAAGATAATATTGAAACTAACTTGCAAAATACTTTGGATGATATTAACGAAATTGTGGTTAATGCCGAAAAACGTGTCACACCAAGCCCAAATGACAATAAAACCGAAACTATAGCCGCGACTACGTTGGAGGATAATCAAAAATATTTTAATAAACAGTGCTTGACTCCAATCAAAATCCAAGATGTCTTGGTTAAACAGAAAACTCCACAAAGGAAAGGCATACGACAGGTGGCAAGATCATCATTTGTACTAACCTCAGATGAGTGGCACAAAGGAGAAATAGAAAAATACAATGTGAAAAAGATCAAAGAAGAACAAATTGAAACACGTAAAAAAGAAAGACTGCAAAAACTAGAAGAGAAGAAAATTCTAACAAATGTTATTAAAAAACAAACTAGTAAGAAACAGAAAACTAAACGTGAAACAGGATCAGACACATTGCAAAAACAAATAACTACAACTGTAGGAGAAGATGATAAAATTAATACTCTATGTGTCAATAATTTGTCTCAAGATCAAACACACTTTCTGATAGTATCCCATGAAGTGGAAATTCATGAGACACCTCTGTCTAAAAATAAAGAAAATGATAAGAACCACCTGACCTCAACTAAACGTAAAATGGACAGACCTACAGTAGAAGAAATAAATGAAAAAGAACTAAATGCACAAAAACAACTGAGTGACAATAAAATTGAAGAGATACAGATTACATCGAAGAAACAAAAAGTTGAAATGGGACAAACTTTCATACCACCAGAAAAAAAGATCCAAATTCTCTCAGACCAAAAAGTCATTTTCCCATTAAGGACAAACACTTCTAAAGTTACACAAAAAAAGACTGAAGATGTAAAGGGCAATTTCCCATTAAGACCTAAGACTTGTAAAGTTACTGAAAAAAAGACTGAAGGCGAAAAAGAACCAAGTACTTCTAAAATTACCCGAAAAAAGACTAATGGCGACGTACTTGATAGATTTATTGAAAATGCTAGCAATAAAACAGTTTACTCAATAGACGAGCTGCAAAGGATACTTTCTGAAGACTAA
- Protein Sequence
- MDSDAKAKWKCDECLSKHLIKDKNEKESSLPKVNCTCGTVTLSKEDVRDILKEEFLNMKSQLLNELRHSLKEMVKEELKPYINKMDEMEKSHVFLNEAYDVAKVDAEKYQQAVIKLQFENENQKTTIRDNTIVKKRKAYNQESLKNAIEAVKKGMSKKLASKTFNVPRGTIQCRLKNVNCKDLPGPNPVLDKEEEDALVRWLNECCRKGFPKRKIDLQLSVASFIKKAGRKNPFKNGFPGKKWNSLFMRRHPELSERTPESVTSASAAVSEQDIKGWFSNIESYLKDNDYYEVLSDPSRIFNGDESNFQLCPKSGKVLALRGERDVYEVDHAAAKSALTVLFTFGANGDITPPLVVFPNKRLPKDITSTVPGEWGIGLSDSGWMKAELFYDYIKNVFHPYLLRTQRKFPIILFVDGHKTHLSIDVSELCRSLDIVLIALYPNATRLLQPADVAAFRPLKLAWKNSVLQWRRDHPLETLTKNNFVPLLKDALENGVQPSTVINGFRTTGLYPWNSEAINYKKCLGKGSSETKKSTKEEQKVMTKDILHQLVGTQKMTALQNVSIDSLSDSDKILKKICNFFQNNEKDNTAPVLNDSIDLLTNDLEGTSTNNVSDYVNINNLPLLFFDDLVTSKSPNLIKDNIETNLQNTLDDINEIVVNAEKRVTPSPNDNKTETIAATTLEDNQKYFNKQCLTPIKIQDVLVKQKTPQRKGIRQVARSSFVLTSDEWHKGEIEKYNVKKIKEEQIETRKKERLQKLEEKKILTNVIKKQTSKKQKTKRETGSDTLQKQITTTVGEDDKINTLCVNNLSQDQTHFLIVSHEVEIHETPLSKNKENDKNHLTSTKRKMDRPTVEEINEKELNAQKQLSDNKIEEIQITSKKQKVEMGQTFIPPEKKIQILSDQKVIFPLRTNTSKVTQKKTEDVKGNFPLRPKTCKVTEKKTEGEKEPSTSKITRKKTNGDVLDRFIENASNKTVYSIDELQRILSED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00806669; iTF_00806670; iTF_00806671; iTF_00806672; iTF_00806673; iTF_00806674;
- 90% Identity
- iTF_00806669;
- 80% Identity
- iTF_00806669;