Hpse007411.2
Basic Information
- Gene Symbol
- retn
- Assembly
- GCA_947369225.1
- Location
- OX376327.1:5200781-5207779[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-20 7.6e-17 61.9 0.0 16 89 2 73 1 73 0.95 2 2 8.1 1.4e+04 -3.0 0.0 25 38 205 218 168 219 0.65
Sequence Information
- Coding Sequence
- ATGCGAGGCACACCAATAAACCGGCTTCCGATCATGGCCAAGTCAGTGCTCGACCTGTACGAGCTGTACAACCTGGTGATAGCGCGCGGTGGGCTGGTGGAAGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCGGCTTCCGTCGTCCATCACATCTGCTGCCTTCACGTTACGCACACAATACATGAAGTACCTGTATGACTACGAGTGCGAGAAGAAGAACCTTTCCACTCGCAGCGAGCTGGACGCCGCTATTGAAGGCAACAAGCGCGAGGGACGTCGGGCTTCTGGCCAGTATGATGCGCAAGCGGCACTTGCTATGCCGCCGTTGAACCGTGGGGTGCCAGCGTCCCTGGCGCAGCTGACCCAACACATGCAGCCCTTGTCCCTTTCCCTCGGAGGAGGGGTTGGCGGAGTGCCTCGACTGCCCCCTCTGCCGCCGCATGCGCCTCACCTATCGCAGCATGACATCGAGTATCGCGTCCGGGAGTACATGAAGATGATCCAGCAACAGAGGGAGCTGATGAGGAATGGATCGGAGTCGCCGCCAGGCAGCGGACCGGCGCCGATGATGTCTCCGCGCGATGCTGCCGCGCTCAGTGCCATCGACGTGTCCCGCCTCACGCTCTGGTCCCTCTACAACAACAACAACAACAACAGCCCGCAGCCGGACCTGGAGCCGCAACGCGAGGCCCTGAACCTCAGCGAGAGCCCCAACTCCAGCATTAGCGGCGGCAAGCGCGAGGCCTGCCGGTCGCCCCCTCCCCCTGCCAAGCGGCGCACCCCGCGGCCGCCATCCCCCCGCGCGCCGTCTCCTCCCCGCCCCGCGAGTCTGCCGCATCACCCGCAAGTCAACGGGGGGAGCAGCACCAATGTGAATGGTGCTGCCTTCAAGATTACCACTAGAGGAGACGCAACCACAGGCGACCAGCAACTCGTGGTGTCAATAGAACTGAACGGAGTGACGTACGAAGGCGTCCTGTTCCCCTCACAAAGCGGCAACGGCCAGAACGGGCACCGACAAATGGTCTCTTAA
- Protein Sequence
- MRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLTQHMQPLSLSLGGGVGGVPRLPPLPPHAPHLSQHDIEYRVREYMKMIQQQRELMRNGSESPPGSGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSSISGGKREACRSPPPPAKRRTPRPPSPRAPSPPRPASLPHHPQVNGGSSTNVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSQSGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00723754;
- 80% Identity
- -