Hpse003448.1
Basic Information
- Gene Symbol
- Rel
- Assembly
- GCA_947369225.1
- Location
- OX376318.1:10052830-10075437[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-35 6.7e-32 111.2 0.3 1 168 60 223 60 224 0.86 2 2 2 1.2e+04 -3.6 0.0 98 137 315 355 301 359 0.74
Sequence Information
- Coding Sequence
- ATGTCTTCAAGTGAACAAGATTTCATTGTAAGCACCAGCTCGGAGGGATCACCGCCACAGCCTAGAGGCTCAACGCAGTCGTCACCCTCACAGCAGGTGCCTCAGAGTCCTCCTAAGTTGTCTGGACTAACCTGCACAGTAGACGAATTTCTGCACCATGACTCTAAAGGTCCCTGTTTACGTATCATAGAGCAACCTCAGTCACAGTTCAGATTTCGATACAAGAGTGAGATGGGTGATGGAACTCATGGCTGCTTACTCGGCTCGACCCCTTCCAGCAAGAAAAACTTTCCTGCTGTTGAATTGATGAACTACGCGGGCAAAGCAGAGATAAAATGTGAGCTAATACAAGCAAACAATCTTGATGAGCATCCACATCAGTTGATCAAGAATGAAGGAGATAATGTCATTGACATGATTGTGCCAAATGAGGAGGGATACATAGCACGTTTTTCTACTATGGGTATAATTCATACAGCCAAAAAAGAGGTTCCTGTGGTGTTGCACAAAAAATATTTGGAGAAACATCCAACAGCACGTCAGACTCTGAAACAATGTAAATCCATTGCGAAGTCCATCGATCTTAACATCGTGCGGCTGAAATTCAGCGCCTATCAAATCGTAACCAAAGAGAAAATTTGTTGGACCTGTTCGGAACCCATTTACAATACGAAGAGCGTTGCTACTAACATATTACAAATATGCAGATGTAGTAGATACTACGGCAAACCGGAAGGAGGTGACGACCTGCTCCTATTTGTTGAAAAAGTTAGCAGAAAAAATATAGCGGTTAAATTTTTCGAGAAGGATGAAAATGGTGGCGTTGGCGGCTGGTCGGACTATGCAAGGTTTTTACAGTCAGAGGTTCATCATCAATATGGCATTTTCTGTAGAACACCACCCTATAAAATTATAAACATCACCTCCGACGTGAAAGTTTTCATACAACTGTATCGACAATCTGACGGAGCTACGAGCGTAGCTAAAGAGTTCACCTACAAAGCCTCTCCTTCTGCCGTGCTCAAACAACAGCGCATCAATAAGAAACGAAAGATAGACTTAGAATGTTCTACTTCTGAAATTCCTATAGTTGTACAACACACTTCTGAAGTGCAAATGCCTCTCCAAGGTAATGTACAAAGAACACGAAATTCTGGAGTACAGATGCCTAACATAACTGGAGGACAGGTGCAGGAAAGAGCACAAATCACTATTGATAGTATGATACCTCAATTTGATGCCTTGCCAATGCTTGACGAAAGTAATGTGGTACATCAAAGCAGTCCCATCGAACGAACTGATGATTTACCTGATATCATGCCTCTTATCACCTTTGATCAACCACAGCAGCAAGCTATGATGGAAACCGTTCAAATTGAAGATGAAGAAATGATTATAACCGATGCAAGTGTCCTTAATAGTGACAACATTGAGAATCATTATAATGTTATCTCTCCTTTGCCATTCGATCTTGATGTGCCTATCGGGCCAGAAAACGATGCTGTGCTGAGGGCCAACCCTATGTTAAGTCAGGGGCAGCCTAATGTATTGAACCCAGTGGCGGCAATGGTAGCGTCCAACCTCGACCCGAACCTAGAAGAGTTTGAGAGATTCCAAGCAGGGGAATATTTTGACCCAACGGATTTAGAAGACGGTTACTTATATGCGAATTGTGAATCTAAGCTACGCTTCCAAGATTTCCCAGATGACATAATGGAGACGGAAAATCAAGCTCCAAGTGTAGAAAGCGCCAAACTTCCGGCTTTTTCTAGAGCAAATTTCACCGAAATCAAGAAGCTATTAAAGGAGATATACGAAATTGTGAAACATGGAAAATTCGACAAAGAAGAAGTCCGCAAGAAAATGAATAGTCTTTTTCAGATTAGACAAGATGATGGCGGCACGTTTCTTCACATGGCACTGACCAGCCAGCTGAGTTTAAAGTTCATCAATCTGATCCAAACATTGGGGATGCCGCAGCTGCTGAATCTCACCAATAACCGTCAGCAGACCATCCTGCACCTCGCTGTCTGTTACGACCTGCCGCGTCTTGTTGCCTTCCTTGTAGCCAATGGCTGTGATCCTATGATAGAAGACCATGAAGGCAATAACGCTATTCATTACGCGGTCAAAAGCCAAAGTTCTTTGGAGTCGCTTTTGGAAGCCATCCAGTGTAATGGTGTCGCATACAATTTGAACGCCTACAACGTTGATAAGCAAACGGCTCTTCACTTGGCGTCGATTTACGACTCAGAGTGTAGCGCTCGCCTGCTACTGCAGCACGGCGCGAGCTACAACGTGCGCGACATCGAGGGCCGCACGCCGCTGCACCTCGCCACCTACGACGACTATCTGGGTGTCACCAGGGCGCTGCTAGACTCTGTGCTGCCGAATGACGTCGACGTGGTAGATGGGCAAGGTTCCACACCACTGCAGGTGGTCTGCGATAGACACATCAGGAGCAATTCACTCGAGATAATCAAGCTGTTGCTCGAGAAAAAGGCAGACCCATTGAAATGTCAGGGTAAAACCAAATGTCCGTTGAAGCTCGCAAAAAGCCGCCCGCAAATCTGGGAGATTATGAAGAAATATGTTCAGGAAGCTCGTGCGCATCCGTGCGACTCCGAGGATGAGTTTCATACTGCTGACGAAGGCGACTCTGAAGACGATGTTGAAATGTTGTCCAAGATACAGAATATGAAACTTGAATAG
- Protein Sequence
- MSSSEQDFIVSTSSEGSPPQPRGSTQSSPSQQVPQSPPKLSGLTCTVDEFLHHDSKGPCLRIIEQPQSQFRFRYKSEMGDGTHGCLLGSTPSSKKNFPAVELMNYAGKAEIKCELIQANNLDEHPHQLIKNEGDNVIDMIVPNEEGYIARFSTMGIIHTAKKEVPVVLHKKYLEKHPTARQTLKQCKSIAKSIDLNIVRLKFSAYQIVTKEKICWTCSEPIYNTKSVATNILQICRCSRYYGKPEGGDDLLLFVEKVSRKNIAVKFFEKDENGGVGGWSDYARFLQSEVHHQYGIFCRTPPYKIINITSDVKVFIQLYRQSDGATSVAKEFTYKASPSAVLKQQRINKKRKIDLECSTSEIPIVVQHTSEVQMPLQGNVQRTRNSGVQMPNITGGQVQERAQITIDSMIPQFDALPMLDESNVVHQSSPIERTDDLPDIMPLITFDQPQQQAMMETVQIEDEEMIITDASVLNSDNIENHYNVISPLPFDLDVPIGPENDAVLRANPMLSQGQPNVLNPVAAMVASNLDPNLEEFERFQAGEYFDPTDLEDGYLYANCESKLRFQDFPDDIMETENQAPSVESAKLPAFSRANFTEIKKLLKEIYEIVKHGKFDKEEVRKKMNSLFQIRQDDGGTFLHMALTSQLSLKFINLIQTLGMPQLLNLTNNRQQTILHLAVCYDLPRLVAFLVANGCDPMIEDHEGNNAIHYAVKSQSSLESLLEAIQCNGVAYNLNAYNVDKQTALHLASIYDSECSARLLLQHGASYNVRDIEGRTPLHLATYDDYLGVTRALLDSVLPNDVDVVDGQGSTPLQVVCDRHIRSNSLEIIKLLLEKKADPLKCQGKTKCPLKLAKSRPQIWEIMKKYVQEARAHPCDSEDEFHTADEGDSEDDVEMLSKIQNMKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -