Basic Information

Insect: Hirtodrosophila trivittata
Gene Symbol: -
Assembly: GCA_035045065.1
Location: JAWNNK010001445.1:2172542-2179231[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.002 18.8 2.1 1 23 241 263 241 263 0.97

2 18 7.8e-06 0.00065 20.3 0.4 1 23 269 291 269 291 0.97

3 18 0.0011 0.096 13.5 0.9 1 23 297 319 297 319 0.95

4 18 1.6e-05 0.0014 19.3 3.1 1 23 325 347 325 347 0.97

5 18 3.7e-05 0.0031 18.1 4.7 1 23 353 375 353 375 0.99

6 18 6.8e-05 0.0057 17.3 5.7 1 23 381 403 381 403 0.97

7 18 3.4e-07 2.8e-05 24.6 4.3 1 23 409 431 409 431 0.98

8 18 1.2e-07 1e-05 26.0 2.4 1 23 437 459 437 459 0.97

9 18 7e-05 0.0059 17.3 6.7 1 23 466 488 466 488 0.97

10 18 0.00012 0.01 16.5 6.5 1 23 494 516 494 516 0.98

11 18 1.1e-05 0.00091 19.8 4.5 1 23 522 544 522 544 0.98

12 18 7.9e-06 0.00066 20.3 8.1 1 23 550 572 550 572 0.98

13 18 6.4e-06 0.00054 20.6 7.6 1 23 578 600 578 600 0.97

14 18 7.2e-07 6e-05 23.5 7.7 1 23 606 628 606 628 0.98

15 18 0.00022 0.019 15.7 9.5 1 23 634 657 634 657 0.95

16 18 8e-05 0.0067 17.1 0.9 1 23 663 685 663 685 0.98

17 18 0.00087 0.073 13.8 3.4 1 23 695 717 695 717 0.97

18 18 9.9e-06 0.00083 20.0 1.6 1 23 723 746 723 746 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.002	18.8	2.1	1	23	241	263	241	263	0.97
2	18	7.8e-06	0.00065	20.3	0.4	1	23	269	291	269	291	0.97
3	18	0.0011	0.096	13.5	0.9	1	23	297	319	297	319	0.95
4	18	1.6e-05	0.0014	19.3	3.1	1	23	325	347	325	347	0.97
5	18	3.7e-05	0.0031	18.1	4.7	1	23	353	375	353	375	0.99
6	18	6.8e-05	0.0057	17.3	5.7	1	23	381	403	381	403	0.97
7	18	3.4e-07	2.8e-05	24.6	4.3	1	23	409	431	409	431	0.98
8	18	1.2e-07	1e-05	26.0	2.4	1	23	437	459	437	459	0.97
9	18	7e-05	0.0059	17.3	6.7	1	23	466	488	466	488	0.97
10	18	0.00012	0.01	16.5	6.5	1	23	494	516	494	516	0.98
11	18	1.1e-05	0.00091	19.8	4.5	1	23	522	544	522	544	0.98
12	18	7.9e-06	0.00066	20.3	8.1	1	23	550	572	550	572	0.98
13	18	6.4e-06	0.00054	20.6	7.6	1	23	578	600	578	600	0.97
14	18	7.2e-07	6e-05	23.5	7.7	1	23	606	628	606	628	0.98
15	18	0.00022	0.019	15.7	9.5	1	23	634	657	634	657	0.95
16	18	8e-05	0.0067	17.1	0.9	1	23	663	685	663	685	0.98
17	18	0.00087	0.073	13.8	3.4	1	23	695	717	695	717	0.97
18	18	9.9e-06	0.00083	20.0	1.6	1	23	723	746	723	746	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACATTAGGCGGACCGTCGCAATTGCCTCACAATAAAACAGATCATAATAAAGAGGACGGCGGCAAAGCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACCTATCACGAGGTCTTTGGGAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGTCAGTTGCCACCACCACAActgccaccaccgccgccactGCCTCCGCAGACGACGCATTCGGCaagcgcagctgcagctgcagcggcggtGTCCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGCCAATGCAGCAGCCGCGGCTGCAGCGGCCGCATCAGTAGCGGCAAcagctcagcagcagcaacagcaacaacagcaacagcagcagcagcaacaacagcaacagccagcGACAAGCACAAATGCTGGAACCCAACAGGGCAGCGCCACGGTGACCACGACCAGCTCTGGGAGCAATGGTGGCAACAATGGGGGTAACAACTCGACAACGACGACGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATTCATGGCGTCGATGGTCAGTCGAGCGTTGCGTTGGCGCCGGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGATATTTGTGGCAAGATGTTCCAATTTCGTTATCAGCTGATTGTGCACCGTCGCTACCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTGTGCGGTCAGGGCTTTACCACATCGCAGGATTTAACCAGACATGGTAAAATTCATATCGGCGGTCCCATGTTCACGTGCATTGTGTGCTTCAATGTGTTTGCCAATAATACAAGTTTGGAGCGCCATATGAAACGGCATTCAACGGACAAACCATTCGCCTGCACCATTTGCCAAAAGACTTTTGCACGCAAAGAGCATCTGGACAATCATTTTCGATCCCATACGGGCGAAACACCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTTAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCACCAGTGCGATGTCTGCGGCAAGAAATATACGCGCAAGGAACACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGGGAGTCACCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTTAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACACGCAAGGAGCATCTAACGAATCATGTGAGACAGCATACGGGCGATTCGCCGCATCGTTGCTCCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGGCTACACACTGGAGATTCGCCCCACAAATGCGAATACTGCCAGAAGACCTTCACCAGGAAGGAGCATCTCAATAATCATATGCGGCAGCATTCAAGCGACAATCCCCATTGCTGCAACGTCTGCAACAAGCCCTTCACACGCAAGGAGCATCTAATCAATCACATGTCCCGCTGCCACACCGGTGATCGTCCCTTCACCTGTGAAACCTGCGGCAAATCCTTCCCACTCAAGGGCAATCTCTTATTCCATCAGCGTAGCCACACCAAGGGTCAAGAGTGTGAACGTCCATTTGCCTGTGAGAAGTGCCCCAAGAACTTCATATGTAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACCACAACGATGCACACCATACAGCAGATAACAGCAGGCGCTGCAGCAGCCGGCGCCGGAGCCGTCCAGTTGACACCAGGCCTGGTGCCACTCGTTACCAGCACGCTGATATCCTCGCACAATGCGCAACAGtcgcagaagcagcagcaggtaacagcagcagccgttgcTGCCCATCagcaggcggcagcagcagccgctgcacaacaacaggcggccgcagcggcggcggcacagcagcaagcagccgcagcagcacaccagcagcaccagcaacaggtcgctgcacagcagcaacaacagcaacagcaggcggCAGTTGCAgcacatcagcagcagcaacagcaactgcagcagcagcaattgctgcaATTGTCCATACAGCAGGCggcgcatcatcatcagcagcagcatcagcaacaacagcaacatcatcagcagcaacagcaacaggcgcATCAGCAAGCgccgccacagcagcaacagcaacaacaacagccgccaCCACAGGTGCCCATTGCATTGATAAGTGATCCAAGCGCGCTGGCGCGTGCCGCCATGCAGCTACAGCATCTGCCCAGCAATGTGGAGCAGCATCCAGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPSQLPHNKTDHNKEDGGKAPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAVSTNNAAVAAVMASANAAAAAAAAASVAATAQQQQQQQQQQQQQQQQQQPATSTNAGTQQGSATVTTTSSGSNGGNNGGNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISSHNAQQSQKQQQVTAAAVAAHQQAAAAAAAQQQAAAAAAAQQQAAAAAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQQHQQQQQHHQQQQQQAHQQAPPQQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPSNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -