Htri008186.1
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- -
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010000816.1:3694433-3696026[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.4e-17 9.9e-14 51.1 0.0 2 45 339 382 338 382 0.95 2 3 0.098 1.8e+02 2.2 0.0 28 37 412 421 411 423 0.93 3 3 1.2e-20 2.2e-17 62.8 0.0 2 42 448 488 447 489 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCGTCCACCATAATGGATATACAGCGCGTCCTGCTCAgccagcaaacaaacaaccaaaGCTGCGAAGTGTTGCTAGTGGCCAGAGACGGCATCAGTGTACGCGCCCATCTTTTCGTACTGAGCACTTGCAGCGATCTTATGCGCAATTTGCTAGTCGATTTGCCCGTCGGCCAGGAAGCAACTGTCATTTTGCCGGACATACGCGGCGAACTTTTGGAGACCATCAATCTATTGGGCATAAAATCGGCTATTAGCTTTGAAACTAATCCTACTTCCCTGTCCGCTTCGGATGTTGTCAGCGACGCCATGGCTGTGGAGGCAGCAAAGTCAATAAACGGTCTGCATATTGCTAGTGCAGATCTCATGGGAGACGATGATGAGGAGGACGATAGTAATGGTGGTGTCGGTAAAATAGAAGTGGGAAATAGTGTACTCTCTGACACCCAACAGTCTCAAGAGCAGGACAGTCGCTCGCTGGAGTTTCTTAATGTATACAGCGATCAGCCAAAGATAACATACTCCATTGAACACATGGACGGCTCAACGAGTGGAAATCAGTACATATTGACCGAAAACACAGGCACATTTACCATAACACAGTCATCGTCCGTTAGTAAATTGGATGGATCAGAAGGATCAAATGTCACTGGTGGTGTCCTGGCAGATGATGATGGGGACGTTGATGATGATCACGATGAATCTGAGTCTCAGTTAATTGAAGAGGAGTTTATGGCAGCAGCAGGCCCACTAATTGAGATGAGTACGGATGTAGATGCAGATGTCGACATGACCGACGATGCATTGCTCGAGGGAGATGTTGGAGacgaagaggaagaagaggaagaggaattAATGGACGTGAAACCTCGCAAATCCCAGCTCGAtattaaattgcttaaaaCAAGAGTGCGACAGCGACCAACAGGCTCAAAGGTCTCAAAGAAGACTATGACGAAACAGCATCAACAATTTGCCGCATTGAAAAGGGAGATCAAAGACGATATTAATGATGCCCTAGATTTGGCAGCAGAAGCTGTACTGCACGAGGGGCTTAGTCTTCAAAAGGCCGCAGATCGTTACGACATATCAAAGACCGTATTATGGCGACGAGTTCGTTCCAATCCAGCCTACATGAGAATTAAACGAGAGAAACCGTCCCTATCGGAGGCTTATGAACGTTTGAAAAATGGTGACTCGCTGAAAAGCATAAGCCAAGATCTTCATATACCCATGTCCACGCTGCACCGGCACAAGGTGCAGTTGGGTGCACAAGGTCGATTACCCGATTTTGTTGCATGTCGCCGTCGGGACAGTACTCCAAAGGACGAACTGCGTGAAAAGCTAGCCAAAGCAGTGCATGCCTGCCTTAACGGCGGCATGTCACAAAACCATGCAGCAAATCTATTTGAAATACCCAAGAGCACGCTCTGGCGGCACATACAGCGCCACGTTAGTGAGGCGGACCGAAAGGTCAAGGAGGAGCATGATGAAGATGACGAAGATGTTCTCAACTAG
- Protein Sequence
- MGHSSTIMDIQRVLLSQQTNNQSCEVLLVARDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLETINLLGIKSAISFETNPTSLSASDVVSDAMAVEAAKSINGLHIASADLMGDDDEEDDSNGGVGKIEVGNSVLSDTQQSQEQDSRSLEFLNVYSDQPKITYSIEHMDGSTSGNQYILTENTGTFTITQSSSVSKLDGSEGSNVTGGVLADDDGDVDDDHDESESQLIEEEFMAAAGPLIEMSTDVDADVDMTDDALLEGDVGDEEEEEEEELMDVKPRKSQLDIKLLKTRVRQRPTGSKVSKKTMTKQHQQFAALKREIKDDINDALDLAAEAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVQLGAQGRLPDFVACRRRDSTPKDELREKLAKAVHACLNGGMSQNHAANLFEIPKSTLWRHIQRHVSEADRKVKEEHDEDDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570162;
- 90% Identity
- iTF_00806088;
- 80% Identity
- iTF_00806088;