Hhis005262.1
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- -
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000296.1:579898-581229[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.47 3.3e+03 -1.5 0.0 27 48 54 75 49 77 0.85 2 8 0.014 95 3.5 0.3 16 45 179 208 167 212 0.84 3 8 3.5e-05 0.25 11.7 0.2 21 48 212 239 200 243 0.82 4 8 0.00041 2.9 8.3 0.2 21 46 240 265 236 268 0.91 5 8 0.00011 0.78 10.1 0.1 18 46 291 320 284 323 0.83 6 8 0.56 4e+03 -1.7 0.0 27 43 329 345 327 351 0.71 7 8 0.004 28 5.1 0.2 22 45 352 375 349 378 0.90 8 8 0.00034 2.4 8.6 0.1 21 52 407 438 405 439 0.93
Sequence Information
- Coding Sequence
- ATGGATCGAGTTTGTCGAGTTTGCATGAGTACCGAAGTAACCTTGGTGGATGTTTTTGCTGAGAGTCAGCTGTCTGAGAACAAACTCACCCTGGCAGATATGCTGAACGAGTGCGTCATCTCCAAAGTAAAGCGAGACGATAAATTACCACAGAAGATTTGCGGTCCCTGCGTTGCCGATGTGAAGTCAGCTTACAGATTGAAGCGCAACTTCGAAGAGAGCCACAAACAGCTGAGCAAGAAGTTAGAGGAGGATGACTTCGACGCATTTATCGACTCACTTGAAGCAGAAGACTGGGAACTTAACACGGATTTTGTTAAGACTGAGCCAGAGGAGAGCTCTGATCTGGAGAGTGTTAAAGAAAATCTATCACAATGTGAGAGCGATCTAGTTCAGGAAAAAGCAACAAACTCTAAGATTTCGAATAGCAAAAAAACTGATCGCAGAATCTTGGTTGCTAAAAGAAAGACAAATTCTTATGTCTGCACGACGTGCTGCAAGGCTTTCAAGAAAAAGTCAGAGTTGGCCTCACACAGGAGCGTCCATATTGGCGAACGTCCTTATCAGTGTCCACACTGCCCGAAAAGTTTTATACAGCCTTCAGGTCTTAAGAATCACATGCGTGTGCACACCAACGAACATCCCTTTAAATGTCCGCGCTGCCCAAAAGTCTTTATAAATGCATCAAATCTCAAAAGACACATCCGAGTTCACACCGGGGAAAAACCTTTTAAGTGTCCACACTGCTCAAAAGAATATAGCCAAAAGTTAAATCTGAACCGACACATCCAAATTCATACTGAATATGGCTACAAGTGTACCTTCTGCCCGATTTCCTTCAAAGAAATGGATTCTCTCAAGAAACACGAACGTAGTCACAAAGACGAACATCCTTCTAAGTGCCCACACTGTTCGAAATCCTTTTCCACTACATCAAATCTCAACAGACACATTCGAATTCACACCGGCACAAATCTTCATCAATGTAAACGCTGCCCGAAAGCCTTCAATAGTGCATCAAATCTGAAAAGGCACAACCTGATTCACACTGGCGACCAACCTTATAAATGTCCTCACTGCTCGAAAGCCTTTAACCAACCATCAAGTCTCAAGACACACATACGCATTCACACCGGCGAATGTCTTTACAAGTGTGACCACTGCCCGAAATCTTTCATACACTTGTCTACATTCAGGATACACACCTGCCTCCTCAACGGCGAACGTCCTTTTAAGTGTACAATCTGCCCGAAAACCTTTATCCAAAAATCGCACCTCATCAAACATTACAGCCTTAACAAACACGCTAAGCCCAAAAAGGATGAGAAATAA
- Protein Sequence
- MDRVCRVCMSTEVTLVDVFAESQLSENKLTLADMLNECVISKVKRDDKLPQKICGPCVADVKSAYRLKRNFEESHKQLSKKLEEDDFDAFIDSLEAEDWELNTDFVKTEPEESSDLESVKENLSQCESDLVQEKATNSKISNSKKTDRRILVAKRKTNSYVCTTCCKAFKKKSELASHRSVHIGERPYQCPHCPKSFIQPSGLKNHMRVHTNEHPFKCPRCPKVFINASNLKRHIRVHTGEKPFKCPHCSKEYSQKLNLNRHIQIHTEYGYKCTFCPISFKEMDSLKKHERSHKDEHPSKCPHCSKSFSTTSNLNRHIRIHTGTNLHQCKRCPKAFNSASNLKRHNLIHTGDQPYKCPHCSKAFNQPSSLKTHIRIHTGECLYKCDHCPKSFIHLSTFRIHTCLLNGERPFKCTICPKTFIQKSHLIKHYSLNKHAKPKKDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00805329;
- 90% Identity
- iTF_00805329;
- 80% Identity
- iTF_00805329;