Basic Information

Insect: Hirtodrosophila histrioides
Gene Symbol: -
Assembly: GCA_037075165.1
Location: JBAMCL010000637.1:1066550-1069879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0006 0.04 14.6 7.7 1 23 168 191 168 191 0.97

2 16 0.0015 0.1 13.3 3.1 1 23 243 266 243 266 0.96

3 16 0.01 0.68 10.7 2.9 1 23 330 353 330 353 0.96

4 16 0.0098 0.66 10.8 0.4 2 23 405 426 404 426 0.96

5 16 7.2 4.8e+02 1.8 1.6 1 21 539 559 539 560 0.81

6 16 0.024 1.6 9.6 0.6 1 23 569 591 569 591 0.94

7 16 0.00034 0.023 15.4 2.1 1 23 598 620 598 621 0.95

8 16 0.00054 0.036 14.7 1.4 2 23 629 650 628 650 0.96

9 16 0.0017 0.12 13.2 0.2 3 22 678 697 676 700 0.89

10 16 0.0039 0.26 12.1 0.8 1 23 737 760 737 760 0.96

11 16 0.15 10 7.0 1.0 1 22 767 788 767 788 0.94

12 16 0.0016 0.11 13.3 0.8 1 23 797 820 797 820 0.98

13 16 1.9e-05 0.0013 19.3 0.5 1 23 838 861 838 861 0.97

14 16 0.37 25 5.8 0.2 1 23 871 893 871 893 0.93

15 16 3e-05 0.002 18.7 3.3 1 23 899 921 899 921 0.99

16 16 6.2e-05 0.0042 17.7 0.9 1 23 927 949 927 949 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0006	0.04	14.6	7.7	1	23	168	191	168	191	0.97
2	16	0.0015	0.1	13.3	3.1	1	23	243	266	243	266	0.96
3	16	0.01	0.68	10.7	2.9	1	23	330	353	330	353	0.96
4	16	0.0098	0.66	10.8	0.4	2	23	405	426	404	426	0.96
5	16	7.2	4.8e+02	1.8	1.6	1	21	539	559	539	560	0.81
6	16	0.024	1.6	9.6	0.6	1	23	569	591	569	591	0.94
7	16	0.00034	0.023	15.4	2.1	1	23	598	620	598	621	0.95
8	16	0.00054	0.036	14.7	1.4	2	23	629	650	628	650	0.96
9	16	0.0017	0.12	13.2	0.2	3	22	678	697	676	700	0.89
10	16	0.0039	0.26	12.1	0.8	1	23	737	760	737	760	0.96
11	16	0.15	10	7.0	1.0	1	22	767	788	767	788	0.94
12	16	0.0016	0.11	13.3	0.8	1	23	797	820	797	820	0.98
13	16	1.9e-05	0.0013	19.3	0.5	1	23	838	861	838	861	0.97
14	16	0.37	25	5.8	0.2	1	23	871	893	871	893	0.93
15	16	3e-05	0.002	18.7	3.3	1	23	899	921	899	921	0.99
16	16	6.2e-05	0.0042	17.7	0.9	1	23	927	949	927	949	0.98

Sequence Information

Coding Sequence: atgaCAAGAACATGCAGAATCTGCGGTGGCGCAGATGGACGCTACTGGATTGATACGCCAGTTGATAAATATGCGGAGAAAACATTCAGCCAACTGCTGTTGGAGTTAACCAGACTTGAGGTCGCTTTAGATAAAGCAGATAAGCTGCCACCTTGGCTTTGCATCAGCTGTGCTCACAGATTAGAGAATGCCTATGATATTGTCATGCAGGCGCGCGAAACTCACGAGCTCTGGCTGCAAAAGCTGTCAAAAGAAGCTGCTTTGGAGGACACCGAAACGGGCACTTTGGAATGCCTGCGAGAGACGCCAATACAATTGCTGGACATCGAGGGCGTAACAATTAAAATGGAGGAGCCATCCGAGCCTGCCATTCCGCAGGATGATCCAACCAGCTCGATTGATCCCTTGATTAAGAAAAGCCTCTTGGATGATGGaagcgatgatgatgacgatgtgCCGCTTAAGCAACGCAAAGCAGCTATTGCAAAATTGCCAATGCTACACAAATGTcataaatgcaataaagcCTTCAAATACGTAACGAATCTCTTCAGGCACAAGCAACGAGACCACAGTCTAGATGAATGCAAGGAGATAGCGAAGGTAGCAGAGGGTAATGAAGCAACTGAACGCCCAGAACCATTTCTACACAACCTTATAAAAAGTTCCATTGCAGCCCGAAGCACTCCTAATCCAGACTCGGACAATGATGCAGCGGATAGCTACTACAAGTGCGATCAATGCGACAAGTCCTACAAGTACATAATGCTTCTTATCAAGCACAAACATAAGGCCCACGGCGCCAACCAGTTGCCATCAGAACCAAAACCAATTCGCAGAGGCGAATCGAGTTCAGAACAAACGCCCAAGCTAAGAGCAGCTCAGCGCTCTAAGCCGCCCAGTACAGATTCCTTGGTGCATAGCCTAATTAAGGAGGTCAACATACCTGATGAGGACGATCTAGACAGCACAAGTGCTGACAATTACTATAAGTGCGATCAATGCGCAAAGTCCTACAAATATATTGTGAGTCTCATCAAGCACAAGCACAAGGAGCACAATACATACAAGGATtctgatgaagatgatgaggAAGCAATGCCATCCAGATATGCAGCGACAACACCTTCAATGTCGAAGCCATCGCGTATCGATCGACGCGTAAAAGGCTTCGATTTGCATCGCTGCAAGCCAAATGGTTCCAAGGAGATTCAATGCATGATCTGTCTGCGCAGATTTATCAAGCTGAGGGAGCTGCGCGAGCATCTGAAAGCCCATCCCACGGATTTTACATTTGACGCTCATGGCGAGCCCATTGAACGCCTTGCCGAAGGTTTTTACAAGACTGCCGTGGAGTCAACGGCGGCTGGCTTGAAACAGCGCATTCTAAATGATCTAAAGGTTGGCATGTATGGCCGCTACTATTCCATAACCAATCAGGCGCGATACGAAATGAATTTGGACAGTTCGGATACAGACAGCGAGGGTGAGGCAGATGTTGTAGAGCGGCGCAGCTATGCCTGTGAGTTGTGTGAATTACCCAACGCCGTGTGGCCACGCAAGTATCAACTGCATGAGCACCACCGGCAGCAGCACACTTGGCTAGAGGCGCCACACGTCTGTCAACGTTGCGACTCACGTTTTCTGAGCGCTCAGCTGCTGGACCATCATACGCGAAAACTTTGCCAGAACACGCTGAAGCGTTTCATGTGCGACAAGTGTCCCCAGCGTTTCTTTTGGCGCCGCAATCTACGTGCGCATCTCGTGGAGCACAAAAATAAGCAAGAAAACTATCCGTGTGATCAGTGCTCACGCAGCTTTCAGGACAAGAGCGCCGTTACTAAGCACAAGCTAATGCATCACGATGTCGGCAACGAACTGCTGCCCTGCCGCTGGTGCACACGCACCTTCTATCGGCCGGCCCTGCTGCATAAGCATGTACAGCGTCACGGCTTCAGAGGCGAGGATCTCCCCCTGGCAGAGACACTGCTAGCTGATGCCGCTAAGTCAACTGGACCTAAGACAATCATTTGCAAACTATGTGATATGCACTTCGTTAGCATTGCTGATCTGCGACGCCATATTTCAATGCAAGCACACAGTGTTGAGGGTTCAAACTATTTGATAAGCACTGAGGAGGGTTTCGAGCTCCAGCTAGATGAAACCGATGATAGTGATGATGACGCCGTTGCTTCTTCTGGCAGATCCTACAGGTGTGATCTGTGCGATATGGCTTTCCAGCGGCGGCGCGACATGAGCGAACATCAATATTCATTACACTCCTTTGACAAATTGCCGCATGCCTGTGAACATTGCATTTTCAAGAGCGTCGATAAGAGCATGCTCGAGCGACATCTGCGTACGCAGTGCCAGAACAAGGAGAAGAAATTCAAGTGCTCACGTTGTGGCTTTAAATTCATGTGGAGCGAGAATCTAGAACAGCATATGGCTACCCAGCATGCTAAATTCAATCAGGCACCCATTGCAACCAAGCGAAGTCGACGTTTCAGATATCAGTGTCCTCATTGCTGGCGCTCCTTTGTTGTGCAGCCCAGCCTGGACAAGCATATACGCGACATGCATGTTGCCAAAAAGAATCCAGGCAAGAAGTATCTATGCTCACTATGCGGCCTGGAGTCGCTTACCCCCAACAAGCTGAGCATTCACATGCAGCGTCACAACGGAGAGAAGCCATTCAAATGCGATCTTTGCGATATGTCCTTTACAGTACATTACGAGCTAAAGGTTCATCGCCGTAAGCACACCGGCGAGCGACCTTATCAGTGCACGTTCTGTGCCAAGGATTTCGCTAGGCCGGATAAGTTAAGGCGACATGTTTACATGCATAGCGTTAAGCGTTAA
Protein Sequence: MTRTCRICGGADGRYWIDTPVDKYAEKTFSQLLLELTRLEVALDKADKLPPWLCISCAHRLENAYDIVMQARETHELWLQKLSKEAALEDTETGTLECLRETPIQLLDIEGVTIKMEEPSEPAIPQDDPTSSIDPLIKKSLLDDGSDDDDDVPLKQRKAAIAKLPMLHKCHKCNKAFKYVTNLFRHKQRDHSLDECKEIAKVAEGNEATERPEPFLHNLIKSSIAARSTPNPDSDNDAADSYYKCDQCDKSYKYIMLLIKHKHKAHGANQLPSEPKPIRRGESSSEQTPKLRAAQRSKPPSTDSLVHSLIKEVNIPDEDDLDSTSADNYYKCDQCAKSYKYIVSLIKHKHKEHNTYKDSDEDDEEAMPSRYAATTPSMSKPSRIDRRVKGFDLHRCKPNGSKEIQCMICLRRFIKLRELREHLKAHPTDFTFDAHGEPIERLAEGFYKTAVESTAAGLKQRILNDLKVGMYGRYYSITNQARYEMNLDSSDTDSEGEADVVERRSYACELCELPNAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDSRFLSAQLLDHHTRKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMHHDVGNELLPCRWCTRTFYRPALLHKHVQRHGFRGEDLPLAETLLADAAKSTGPKTIICKLCDMHFVSIADLRRHISMQAHSVEGSNYLISTEEGFELQLDETDDSDDDAVASSGRSYRCDLCDMAFQRRRDMSEHQYSLHSFDKLPHACEHCIFKSVDKSMLERHLRTQCQNKEKKFKCSRCGFKFMWSENLEQHMATQHAKFNQAPIATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMQRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00567692;
90% Identity: iTF_00803791;
80% Identity: -