Hhis011206.1
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- -
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000504.1:152395-153760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5e-06 0.0003 21.3 0.9 2 23 12 33 12 33 0.95 2 11 8.5e-06 0.00057 20.4 1.7 1 23 39 62 39 62 0.98 3 11 4.5e-06 0.0003 21.3 1.2 1 23 134 156 134 156 0.99 4 11 4.8e-05 0.0032 18.0 1.4 1 23 162 185 162 185 0.96 5 11 8e-05 0.0053 17.4 0.8 1 23 191 214 191 214 0.92 6 11 0.00023 0.015 15.9 0.3 1 21 219 239 219 240 0.95 7 11 0.0028 0.19 12.5 5.0 1 23 263 285 263 285 0.98 8 11 7.1e-06 0.00048 20.7 1.3 1 23 298 320 298 320 0.97 9 11 1.1e-05 0.00071 20.1 5.4 1 23 326 348 322 348 0.97 10 11 1.6e-05 0.001 19.6 1.2 2 23 356 377 355 377 0.96 11 11 0.00064 0.043 14.5 0.7 1 22 383 404 383 407 0.92
Sequence Information
- Coding Sequence
- ATGACAGATAATGCAATAATTAATAAAGCAAATGTTTGTGAAAGATGCGGAAAGTGTTTCTCAAAACCTGCTCTACTGCGTCGCCATCTGGTTGTGCACGGCACCGAAAAACCGTACTCATGTGACAGGTGTTCCAGTCAGTTCTCCCAGCAAAGCTCACTACAGCGTCACATACGCATAAAGCACACTGTGCCCGTGGAGAGCGACGACTCCGAGGTGGCACAACATGCGCTGGCAGCTTTGAAGCAGCTGCAAGCCCCCCACAGCCATACCACAGTTACTAGTACACCGGGACAGGGCACACTTGAGGAGCAGCCTCCTTGCCAAATGGCTAAGATAAAGGATAAACTGCATCCAAATAGGAAGCTGCTGCGGCGACAGAAACAAAATAGCTGCTTCTATGTGTGTGAATACTGCGCCAAGGAGTTTAGCAAGACCTACGATCTCATAAGGCATCGTCGCTCTCACACCAAGGAGACGCCATATCCATGCAATCGTTGCCTCAAGCGTTTTGCCACCCAGTCCAAGTTAAATGAGCATCAAACGCGCCTCCATGACAAGCTGAAAAAGCACACTTGCAGCGTGTGTGGCGCCCGGTACAGCTACAAAGGGGAGCTGAAGAAGCATCTGGCTGACCAGCATCAAGATTTAGTTTACAATTGCGCGCACTGTAGCCGTAGTTTCATTTCGAAAGCTGCCTGGGAGAAACATCAGAAGGTTGAAGCCGATCCGCAGTTGTTTAAGCTAATCCAACTGTTGCCACATCCGGTTTTGTCACAGCGTACCTACAAGTGTTTATACTGTGCGAAGCAGTTCAATCGCAAATACAACTGTCGCATCCATATGGTGACACATTTGAGGCGTTTGCTGAGTGAGCAGCCTGCCAAGCGTCATAGCTGCCTGCAATGCGGCAAGAACTTTCAAAAACCCAGCGATCTGGCGCGACATCTATTAACGCATTCCCAGCTCAAGCAACACATTTGTCAGGTGTGCCAAAAGTGCTTCACCCTGAAGTCAACGTTGACCAGACACTTGCAAACGCATCAACCAGAACGTAAACCAATCAGTTGCCAGGTGTGCGGCAAGTCCTATGCCTCCAAAACATCGCTACACTTGCATCTTCGGTTGCACACTGGCGAGCGACCATTTAGTTGTGAGATTTGCGCTGAAACTTTCCGCACCTCCGGGCACAGGCTAGAGCATATGCGCGCCGAACGTCACAGGAATAACGCCTCCAATGCACTCATCCTATGA
- Protein Sequence
- MTDNAIINKANVCERCGKCFSKPALLRRHLVVHGTEKPYSCDRCSSQFSQQSSLQRHIRIKHTVPVESDDSEVAQHALAALKQLQAPHSHTTVTSTPGQGTLEEQPPCQMAKIKDKLHPNRKLLRRQKQNSCFYVCEYCAKEFSKTYDLIRHRRSHTKETPYPCNRCLKRFATQSKLNEHQTRLHDKLKKHTCSVCGARYSYKGELKKHLADQHQDLVYNCAHCSRSFISKAAWEKHQKVEADPQLFKLIQLLPHPVLSQRTYKCLYCAKQFNRKYNCRIHMVTHLRRLLSEQPAKRHSCLQCGKNFQKPSDLARHLLTHSQLKQHICQVCQKCFTLKSTLTRHLQTHQPERKPISCQVCGKSYASKTSLHLHLRLHTGERPFSCEICAETFRTSGHRLEHMRAERHRNNASNALIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00803760;
- 90% Identity
- iTF_00803760;
- 80% Identity
- -