Basic Information

Insect: Hirtodrosophila histrioides
Gene Symbol: -
Assembly: GCA_037075165.1
Location: JBAMCL010000036.1:1983557-1991566[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9e-05 0.0019 18.8 2.1 1 23 254 276 254 276 0.97

2 18 9.5e-06 0.00063 20.3 0.4 1 23 282 304 282 304 0.97

3 18 0.0014 0.093 13.5 0.9 1 23 310 332 310 332 0.95

4 18 2e-05 0.0013 19.3 3.1 1 23 338 360 338 360 0.97

5 18 4.6e-05 0.003 18.1 4.7 1 23 366 388 366 388 0.99

6 18 8.3e-05 0.0056 17.3 5.7 1 23 394 416 394 416 0.97

7 18 4.1e-07 2.7e-05 24.6 4.3 1 23 422 444 422 444 0.98

8 18 1.5e-07 9.8e-06 26.0 2.4 1 23 450 472 450 472 0.97

9 18 8.5e-05 0.0057 17.3 6.7 1 23 479 501 479 501 0.97

10 18 0.00015 0.0099 16.5 6.5 1 23 507 529 507 529 0.98

11 18 1.3e-05 0.00089 19.8 4.5 1 23 535 557 535 557 0.98

12 18 9.6e-06 0.00064 20.3 8.1 1 23 563 585 563 585 0.98

13 18 7.8e-06 0.00052 20.5 7.6 1 23 591 613 591 613 0.97

14 18 8.8e-07 5.8e-05 23.5 7.7 1 23 619 641 619 641 0.98

15 18 0.00027 0.018 15.7 9.5 1 23 647 670 647 670 0.95

16 18 9.7e-05 0.0065 17.1 0.9 1 23 676 698 676 698 0.98

17 18 0.0011 0.071 13.8 3.4 1 23 708 730 708 730 0.97

18 18 1.2e-05 0.00081 19.9 1.6 1 23 736 759 736 759 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9e-05	0.0019	18.8	2.1	1	23	254	276	254	276	0.97
2	18	9.5e-06	0.00063	20.3	0.4	1	23	282	304	282	304	0.97
3	18	0.0014	0.093	13.5	0.9	1	23	310	332	310	332	0.95
4	18	2e-05	0.0013	19.3	3.1	1	23	338	360	338	360	0.97
5	18	4.6e-05	0.003	18.1	4.7	1	23	366	388	366	388	0.99
6	18	8.3e-05	0.0056	17.3	5.7	1	23	394	416	394	416	0.97
7	18	4.1e-07	2.7e-05	24.6	4.3	1	23	422	444	422	444	0.98
8	18	1.5e-07	9.8e-06	26.0	2.4	1	23	450	472	450	472	0.97
9	18	8.5e-05	0.0057	17.3	6.7	1	23	479	501	479	501	0.97
10	18	0.00015	0.0099	16.5	6.5	1	23	507	529	507	529	0.98
11	18	1.3e-05	0.00089	19.8	4.5	1	23	535	557	535	557	0.98
12	18	9.6e-06	0.00064	20.3	8.1	1	23	563	585	563	585	0.98
13	18	7.8e-06	0.00052	20.5	7.6	1	23	591	613	591	613	0.97
14	18	8.8e-07	5.8e-05	23.5	7.7	1	23	619	641	619	641	0.98
15	18	0.00027	0.018	15.7	9.5	1	23	647	670	647	670	0.95
16	18	9.7e-05	0.0065	17.1	0.9	1	23	676	698	676	698	0.98
17	18	0.0011	0.071	13.8	3.4	1	23	708	730	708	730	0.97
18	18	1.2e-05	0.00081	19.9	1.6	1	23	736	759	736	759	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCGCCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACGTTGGGCGGCCCACCGCCGTTGCCGGGCAGCAAGAGCGATCATAGCAAAGAGGACGGTGGCAATAAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAGCTGCCACCTCCGCagctgccaccgccgccgccactgCCGCCCCAAACGACGCATGCGGCTagcgcagctgcagcagcagcggcggcgtcCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGCCAATGCAGCAGCCGCGGCTGCAGCGGCCGCTTCGGCAGCCGCATcagcacagcaacagcaacaacaacaacagcagcaacaacaacagcagcaacaacaacagcagcagcagcaacagcagcagcagcaacaacaagtgcccGCAACAAGCACAAACGCTGGCACACAACAGGGCAGCGCCACAGTGACCACAACCAGCTCGGGGGGCAGCaatgggggtggtggggtcacgggcacaacgacaacgacgggTGAGTTGCTAATGCCTAAAATGGAGGGCGGCATCCATGGCGTTGATGGCCAGTCGAGCGTTGCGCTGGCGCCGGATGGCACGCCCATTGCGACGGGCACGCATGTGTGCGATATTTGTGGCAAGATGTTCCAATTTCGCTATCAGCTGATTGTGCACCGCCGCTACCATAGCGAGCGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCCCAGGATTTAACACGCCATGGTAAAATACACATTGGTGGTCCCATGTTTACCTGCATTGTGTGCTTCAATGTTTTTGCCAATAATACCAGTTTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACATTTGCACGCAAAGAGCATCTGGATAATCATTTTCGTTCCCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCATACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACACGCAAGGAGCACCTCACGAATCATGTCCGACAGCATACGGGCGATTCGCCGCATCGTTGCAGCTATTGCAAGAAGACCTTCACCCGGAAGGAGCATCTGACGAATCATGTCCGCCTCCATACTGGAGATTCGCCCCACAAGTGCGAATACTGCCAGAAGACGTTTACACGCAAGGAGCATCTCAATAATCATATGCGACAGCATTCAAGTGACAATCCCCATTGTTGCAACGTCTGCAACAAGCCGTTTACACGCAAGGAGCATCTGATTAATCACATGTCACGTTGCCACACCGGTGATCGCCCCTTCACCTGCGAGACGTGCGGCAAATCGTTCCCCCTCAAGGGCAATCTGCTATTCCATCAGCGCAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCATTTGCCTGCGAGAAGTGCCCCAAGAACTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACGACCACAATGCACACCATACAGCAGATAACAGCGGGAGCCGCCGCCGCGGGCGCCGGTGCCGTCCAGCTGACGCCCGGCCTGGTGCCGCTCGTCACCAGCACGCTCATCTCGCACAACTCGCAACAatcgaagcagcagcaacaggtgGCCGCAGCCGTTGCGGCACAACAGCAAGCGgccgctgcggcagcggcacaGCAACAGGCCGCGGCAGCCGCGGCGGCACAGCAgcaagcggcagcagcggcgcatcaacagcatcagcagcaggtcgccgcacaacagcaacagcagcaacaacagcagcagcaggcggcagTTGCAGcccatcagcaacagcaactgcagcagcaacagttgctgcagcTATCCATACAACAGGCGGCGCAccatcatcaacatcagcagcagcaacaacagcagcagcatcatcagcagcagcagcaggcgcatCAACAGCcgcctcagcagcagcagcaacaacaacaacaggcgcCCCCACAGGTGCCCATCGCATTGATAAGTGATCCCAGCGTGCTGGCGCGTGCCGccatgcagctgcagcatctGCCCACAAATGTGGAGCAACATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPLPGSKSDHSKEDGGNKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAASAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVPATSTNAGTQQGSATVTTTSSGGSNGGGGVTGTTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISHNSQQSKQQQQVAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAHQQHQQQVAAQQQQQQQQQQQAAVAAHQQQQLQQQQLLQLSIQQAAHHHQHQQQQQQQQHHQQQQQAHQQPPQQQQQQQQQAPPQVPIALISDPSVLARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -